Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002766.1 Kokia drynarioides strain JFW-HI SEQ_115088, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4156
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33


Found at i:152 original size:30 final size:32

Alignment explanation


    Indices: 116--182  Score: 84
    Period size: 30  Copynumber: 2.2  Consensus size: 32

        106 AATAATTTAT

                                *      *    
        116 ATTTTTATAAATTTTAAAA-GATTAAATTA-A
          1 ATTTTTATAAATTTTAAAATAATTAAAATATA

                    * *                     
        146 ATTTTTATTATTTTTAAAATAATTAAAATATA
          1 ATTTTTATAAATTTTAAAATAATTAAAATATA

                 
        178 ATTTT
          1 ATTTT

        183 ATCACTACTA


Statistics
Matches: 31,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  30   17  0.55
  31    8  0.26
  32    6  0.19

ACGTcount: A:0.46, C:0.00, G:0.01, T:0.52


Consensus pattern (32 bp):   
ATTTTTATAAATTTTAAAATAATTAAAATATA

Found at i:3837 original size:5 final size:5

Alignment explanation


    Indices: 3827--3856  Score: 51
    Period size: 5  Copynumber: 6.0  Consensus size: 5

       3817 TTTAGAGAAT

                                       *       
       3827 GTTGG GTTGG GTTGG GTTGG GTTAG GTTGG
          1 GTTGG GTTGG GTTGG GTTGG GTTGG GTTGG

       3857 ATTTAAGGGA


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   5   23  1.00

ACGTcount: A:0.03, C:0.00, G:0.57, T:0.40


Consensus pattern (5 bp):   
GTTGG

Done.