Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002769.1 Kokia drynarioides strain JFW-HI SEQ_115093, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6510
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37


Found at i:4308 original size:18 final size:19

Alignment explanation


    Indices: 4269--4309  Score: 57
    Period size: 18  Copynumber: 2.2  Consensus size: 19

       4259 ATTATTTGGA

                          *  * 
       4269 TATTGTATAATTTTTTTTT
          1 TATTGTATAATTTTGTTAT

                               
       4288 TATTGT-TAATTTTGTTAT
          1 TATTGTATAATTTTGTTAT

                
       4306 TATT
          1 TATT

       4310 TTAGGTATAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  18   14  0.70
  19    6  0.30

ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71


Consensus pattern (19 bp):   
TATTGTATAATTTTGTTAT

Found at i:4934 original size:34 final size:33

Alignment explanation


    Indices: 4896--4959  Score: 83
    Period size: 33  Copynumber: 1.9  Consensus size: 33

       4886 ATATAATTTT

                 *         *    *             
       4896 TATTTTATTGTTAATTTTGTTATTATTTTAAATA
          1 TATTTGATTGTTAA-GTTGTAATTATTTTAAATA

                  *                       
       4930 TATTTGCTTGTTAAGTTGTAATTATTTTAA
          1 TATTTGATTGTTAAGTTGTAATTATTTTAA

       4960 TGTTATTTAA


Statistics
Matches: 26,  Mismatches: 4, Indels: 1
        0.84            0.13        0.03

Matches are distributed among these distances:
  33   14  0.54
  34   12  0.46

ACGTcount: A:0.28, C:0.02, G:0.09, T:0.61


Consensus pattern (33 bp):   
TATTTGATTGTTAAGTTGTAATTATTTTAAATA
Done.