Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002770.1 Kokia drynarioides strain JFW-HI SEQ_115095, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1970
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.38


Found at i:1599 original size:210 final size:210

Alignment explanation


    Indices: 1104--1888  Score: 1151
    Period size: 210  Copynumber: 3.7  Consensus size: 210

       1094 TCTTGGTCTG

                            *       *                * *                     
       1104 CTTCTCTGTATCTCATTAGGAAGATGACCGCTTTATTGCTTCGCCCCACTTCTCAGTATCTCATC
          1 CTTCTCTGTATCTCATCAGGAAGACGACCGCTTTATTGCTTTGACCCACTTCTCAGTATCTCATC

             *             *       *                                        *
       1169 AGGAAGATGGGGGTTTGAAGTTTTACTCACATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTT
         66 AAGAAGATGGGGGTTCGAAGTTTCACTCACATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTC

                                                 *         * *           *   
       1234 TCTATCTCATCAGGAAGATGACCGCCTCATTTGTTTAAAATCCACTTTTTTGTATCTCATCGGGA
        131 TCTATCTCATCAGGAAGATGACCGCCTCATTTGTTT-TAATCCACTTCTCTGTATCTCATCAGGA

                            
       1299 AGACAGATTTGGTCCA
        195 AGACAGATTTGGTCCA

                 * *                     *                                   
       1315 CTTCTTTATATCTCATCAGGAAGACGACCACTTTATTGCTTTGACCCACTTCTCAGTATCTCATC
          1 CTTCTCTGTATCTCATCAGGAAGACGACCGCTTTATTGCTTTGACCCACTTCTCAGTATCTCATC

                             *                *                              
       1380 -AGAAAGATGGGGGTTCAAAGTTTCACTCACATTTAGCTTCGCTTCATCGATTTGGTCTACTTCT
         66 AAG-AAGATGGGGGTTCGAAGTTTCACTCACATTGAGCTTCGCTTCATCGATTTGGTCTACTTCT

                                                              *              
       1444 CTCTATCTCATCAGGAAGATGACCGCCTCATTTGTTTTAATCCACTTCTCCGTATCTCATCAGGA
        130 CTCTATCTCATCAGGAAGATGACCGCCTCATTTGTTTTAATCCACTTCTCTGTATCTCATCAGGA

                             
       1509 AGAC-GAATTTGGTCCA
        195 AGACAG-ATTTGGTCCA

                                    *  *  *     *                *           
       1525 CTTCTCTGTATCTCATCAGGAAGATGATCGTTTTATGGCTTTGACCCACTTCTTAGTATCTCATC
          1 CTTCTCTGTATCTCATCAGGAAGACGACCGCTTTATTGCTTTGACCCACTTCTCAGTATCTCATC

                       *                                    *                
       1590 AAGAAGATGGGTGTTCGAAGTTTCACTCACATTGAGCTTCGCTTCATCAATTTGGTCTACTTCTC
         66 AAGAAGATGGGGGTTCGAAGTTTCACTCACATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTC

             *                       *   *  *                                
       1655 TGTATCTCATCAGGAAGATGACCGCATCACTTATTTTAATCCACTTCTCTGTATCTCATCAGGAA
        131 TCTATCTCATCAGGAAGATGACCGCCTCATTTGTTTTAATCCACTTCTCTGTATCTCATCAGGAA

                *    **    
       1720 GACATATTTAATCCA
        196 GACAGATTTGGTCCA

                         *           * *                         *       *   
       1735 CTTCTCTGTATCTTATCAGGAAGACAATCGCTTTATTGCTTTGACCCACTTCTTAGTATCTTATC
          1 CTTCTCTGTATCTCATCAGGAAGACGACCGCTTTATTGCTTTGACCCACTTCTCAGTATCTCATC

             *             *  *                                              
       1800 AGGAAGATGGGGGTTTGAGGTTTCACTCACATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTC
         66 AAGAAGATGGGGGTTCGAAGTTTCACTCACATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTC

             *                *     
       1865 TGTATCTCATCAGGAAGACGACCG
        131 TCTATCTCATCAGGAAGATGACCG

       1889 TTTTATTACT


Statistics
Matches: 520,  Mismatches: 50, Indels: 9
        0.90            0.09        0.02

Matches are distributed among these distances:
 209    1  0.00
 210  366  0.70
 211  153  0.29

ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36


Consensus pattern (210 bp):   
CTTCTCTGTATCTCATCAGGAAGACGACCGCTTTATTGCTTTGACCCACTTCTCAGTATCTCATC
AAGAAGATGGGGGTTCGAAGTTTCACTCACATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTC
TCTATCTCATCAGGAAGATGACCGCCTCATTTGTTTTAATCCACTTCTCTGTATCTCATCAGGAA
GACAGATTTGGTCCA

Found at i:1737 original size:37 final size:37

Alignment explanation


    Indices: 1689--1760  Score: 135
    Period size: 37  Copynumber: 1.9  Consensus size: 37

       1679 CATCACTTAT

                                                 
       1689 TTTAATCCACTTCTCTGTATCTCATCAGGAAGACATA
          1 TTTAATCCACTTCTCTGTATCTCATCAGGAAGACATA

                                  *            
       1726 TTTAATCCACTTCTCTGTATCTTATCAGGAAGACA
          1 TTTAATCCACTTCTCTGTATCTCATCAGGAAGACA

       1761 ATCGCTTTAT


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  37   34  1.00

ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36


Consensus pattern (37 bp):   
TTTAATCCACTTCTCTGTATCTCATCAGGAAGACATA

Found at i:1958 original size:124 final size:124

Alignment explanation


    Indices: 1734--1970  Score: 357
    Period size: 124  Copynumber: 1.9  Consensus size: 124

       1724 TATTTAATCC

                          *             *         *                     * *  
       1734 ACTTCTCTGTATCTTATCAGGAAGACAATCGCTTTATTGCTTTGACCCACTTCTTAGTATCTTAT
          1 ACTTCTCTGTATCTCATCAGGAAGACAACCGCTTTATTACTTTGACCCACTTCTTAGTATATCAT

              *             *  *                                       
       1799 CAGGAAGATGGGGGTTTGAGGTTTCACTCACATTGAGCTTCGCTTCATCGATTTGGTCT
         66 CAAGAAGATGGGGGTTCGAAGTTTCACTCACATTGAGCTTCGCTTCATCGATTTGGTCT

                                      *    *              *                  
       1858 ACTTCTCTGTATCTCATCAGGAAGACGACCGTTTTATTACTTTGACGCACTTCTTAGTATATCAT
          1 ACTTCTCTGTATCTCATCAGGAAGACAACCGCTTTATTACTTTGACCCACTTCTTAGTATATCAT

            *                             *                 
       1923 TAAGAAGATGGGGGTTCGAAGTTTCACTCATATTGAGCTTCGCTTCAT
         66 CAAGAAGATGGGGGTTCGAAGTTTCACTCACATTGAGCTTCGCTTCAT


Statistics
Matches: 100,  Mismatches: 13, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
 124  100  1.00

ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37


Consensus pattern (124 bp):   
ACTTCTCTGTATCTCATCAGGAAGACAACCGCTTTATTACTTTGACCCACTTCTTAGTATATCAT
CAAGAAGATGGGGGTTCGAAGTTTCACTCACATTGAGCTTCGCTTCATCGATTTGGTCT
Done.