Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002780.1 Kokia drynarioides strain JFW-HI SEQ_115108, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10862
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30


Found at i:1349 original size:6 final size:6

Alignment explanation


    Indices: 1338--1362  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

       1328 TCTTGGCTCC

                                         
       1338 CTCCCT CTCCCT CTCCCT CTCCCT C
          1 CTCCCT CTCCCT CTCCCT CTCCCT C

       1363 CCCCCATATC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32


Consensus pattern (6 bp):   
CTCCCT

Found at i:5424 original size:209 final size:209

Alignment explanation


    Indices: 5058--5536  Score: 809
    Period size: 209  Copynumber: 2.3  Consensus size: 209

       5048 TTCTCAACAA

                         *                                       * **        
       5058 ACAACCACAAGTTCCACAGCTTGAGCCAAAAAGCTTTGATGA-TTGCACATAACTCAAAAACCAC
          1 ACAACCACAAGTTACACAGCTTGAGCCAAAAAGCTTTGAT-ATTTGCACATAATTTGAAAACCAC

                               **                         *                  
       5122 ATTAAAATAAACTTTTGGTTGTTCTCATTCAACATGAAAATAGGATTGAAATGCTAGAAAACAAC
         65 ATTAAAATAAACTTTTGGTCATTCTCATTCAACATGAAAATAGGATAGAAATGCTAGAAAACAAC

                                                                             
       5187 TTAGGAACAACAAACAAGAACATAAAGGTATGCTACCATACTATTGGCACCAAAAGAAGCAACCA
        130 TTAGGAACAACAAACAAGAACATAAAGGTATGCTACCATACTATTGGCACCAAAAGAAGCAACCA

                           
       5252 ACATAATATTATAAC
        195 ACATAATATTATAAC

                                                                             
       5267 ACAACCACAAGTTACACAGCTTGAG-CAAAAAGCTTTGATATTTGCACATAATTTGAAAACCACC
          1 ACAACCACAAGTTACACAGCTTGAGCCAAAAAGCTTTGATATTTGCACATAATTTGAAAACCA-C

                                   *                                         
       5331 ATTAAAATAAACTTTTGGTCATTTTCATTCAACATGAAAATAGGATAGAAATGCTAGAAAACAAC
         65 ATTAAAATAAACTTTTGGTCATTCTCATTCAACATGAAAATAGGATAGAAATGCTAGAAAACAAC

                                 *                           *              *
       5396 TTAGGAACAACAAACAAGAACGTAAAGGTATGCTACCATACTATTGGCATCAAAAGAAGCAACCG
        130 TTAGGAACAACAAACAAGAACATAAAGGTATGCTACCATACTATTGGCACCAAAAGAAGCAACCA

                           
       5461 ACATAATATTATAAC
        195 ACATAATATTATAAC

                           *                      *                      
       5476 ACAACCACAAGTTACGCAGCTTGAGCCAAAAAGCTTTGCTATTTGCACATAATTTGAAAAC
          1 ACAACCACAAGTTACACAGCTTGAGCCAAAAAGCTTTGATATTTGCACATAATTTGAAAAC

       5537 TGCATCCAAC


Statistics
Matches: 254,  Mismatches: 13, Indels: 5
        0.93            0.05        0.02

Matches are distributed among these distances:
 207    1  0.00
 208   32  0.13
 209  187  0.74
 210   34  0.13

ACGTcount: A:0.44, C:0.20, G:0.13, T:0.23


Consensus pattern (209 bp):   
ACAACCACAAGTTACACAGCTTGAGCCAAAAAGCTTTGATATTTGCACATAATTTGAAAACCACA
TTAAAATAAACTTTTGGTCATTCTCATTCAACATGAAAATAGGATAGAAATGCTAGAAAACAACT
TAGGAACAACAAACAAGAACATAAAGGTATGCTACCATACTATTGGCACCAAAAGAAGCAACCAA
CATAATATTATAAC
Done.