Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002785.1 Kokia drynarioides strain JFW-HI SEQ_115116, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5135
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:4545 original size:17 final size:17

Alignment explanation


    Indices: 4525--4567  Score: 50
    Period size: 17  Copynumber: 2.5  Consensus size: 17

       4515 AAATGAACTA

                *      *     
       4525 ACAAGTAAAATGCAACG
          1 ACAACTAAAATACAACG

                           * 
       4542 ACAACTAAAATACAATG
          1 ACAACTAAAATACAACG

                *    
       4559 ACAATTAAA
          1 ACAACTAAA

       4568 TGAGATGCAT


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  17   22  1.00

ACGTcount: A:0.58, C:0.16, G:0.09, T:0.16


Consensus pattern (17 bp):   
ACAACTAAAATACAACG
Done.