Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000279.1 Kokia drynarioides strain JFW-HI SEQ_111029, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4626
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.31


Found at i:1822 original size:53 final size:53

Alignment explanation


    Indices: 1742--1847  Score: 203
    Period size: 53  Copynumber: 2.0  Consensus size: 53

       1732 AATGATTTAG

                                                                 
       1742 AAGTACATGCCATATGAACCTGTAATAGTGTGATATAGATGGATTCGATCTAA
          1 AAGTACATGCCATATGAACCTGTAATAGTGTGATATAGATGGATTCGATCTAA

                               *                                 
       1795 AAGTACATGCCATATGAACTTGTAATAGTGTGATATAGATGGATTCGATCTAA
          1 AAGTACATGCCATATGAACCTGTAATAGTGTGATATAGATGGATTCGATCTAA

       1848 CTATTGTTTT


Statistics
Matches: 52,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  53   52  1.00

ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31


Consensus pattern (53 bp):   
AAGTACATGCCATATGAACCTGTAATAGTGTGATATAGATGGATTCGATCTAA
Done.