Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002796.1 Kokia drynarioides strain JFW-HI SEQ_115138, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3155
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35


Found at i:214 original size:18 final size:18

Alignment explanation


    Indices: 193--237  Score: 90
    Period size: 18  Copynumber: 2.5  Consensus size: 18

        183 ACAACTTGAG

                              
        193 TTGAGCTCGTAGCTTTAA
          1 TTGAGCTCGTAGCTTTAA

                              
        211 TTGAGCTCGTAGCTTTAA
          1 TTGAGCTCGTAGCTTTAA

                     
        229 TTGAGCTCG
          1 TTGAGCTCG

        238 CATATGGAGA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   27  1.00

ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38


Consensus pattern (18 bp):   
TTGAGCTCGTAGCTTTAA
Done.