Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01002803.1 Kokia drynarioides strain JFW-HI SEQ_115147, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35470
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Found at i:806 original size:68 final size:68
Alignment explanation
Indices: 683--815 Score: 167
Period size: 68 Copynumber: 2.0 Consensus size: 68
673 GGGCTCACAT
* * *
683 TTGCAGTTTACCCGCTAGACATTGGGTGCCAAGATTTGATGAATATCGCTAGTTAATCCAACTAG
1 TTGCAGTTTACCCGCTAGACACTAGGTGCCAAGATTTGACGAATATCGCTAGTTAATCCAACTAG
748 GCC
66 GCC
* * * * * * * *
751 TTGCGGTTTACCCGCTAGGCACTAGGTGCCAGGATTTGACGGATATTGTTGGTTAATCTAACTAG
1 TTGCAGTTTACCCGCTAGACACTAGGTGCCAAGATTTGACGAATATCGCTAGTTAATCCAACTAG
816 AGTTGGGCTC
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
68 54 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (68 bp):
TTGCAGTTTACCCGCTAGACACTAGGTGCCAAGATTTGACGAATATCGCTAGTTAATCCAACTAG
GCC
Found at i:16387 original size:3 final size:3
Alignment explanation
Indices: 16379--16419 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
16369 ATTTGTATTA
* *
16379 AAG AAG AAG AAT ATG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
16420 TAGCTTGTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.66, C:0.00, G:0.29, T:0.05
Consensus pattern (3 bp):
AAG
Found at i:17297 original size:18 final size:18
Alignment explanation
Indices: 17265--17311 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
17255 GAGAGAACTA
17265 AAAAAGAAA-TG--AGAG
1 AAAAAGAAATTGAAAGAG
17280 AAAAAGAAATTGAAAGAG
1 AAAAAGAAATTGAAAGAG
17298 AAAAAGAAATTGAA
1 AAAAAGAAATTGAA
17312 CTTGAGAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
15 9 0.31
16 2 0.07
18 18 0.62
ACGTcount: A:0.68, C:0.00, G:0.21, T:0.11
Consensus pattern (18 bp):
AAAAAGAAATTGAAAGAG
Found at i:17420 original size:16 final size:16
Alignment explanation
Indices: 17395--17441 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
17385 ACAACAAATT
*
17395 ATGAATGAAAAAGAAA
1 ATGAAAGAAAAAGAAA
*
17411 ATGAAAG-AAAAGAAG
1 ATGAAAGAAAAAGAAA
* *
17426 CTGAAACAAAAAGAAA
1 ATGAAAGAAAAAGAAA
17442 GAGTGAGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.68, C:0.04, G:0.19, T:0.09
Consensus pattern (16 bp):
ATGAAAGAAAAAGAAA
Found at i:20422 original size:216 final size:216
Alignment explanation
Indices: 18573--24787 Score: 6533
Period size: 216 Copynumber: 28.8 Consensus size: 216
18563 AACTAGGGAT
* *
18573 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTG-TTATAAATTG-AAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * *
18636 ATTTAGACCAAATGATGGGATTTCCCGAGCATGGAGTGTTCGAAAAATTGCTCGAAGCAATTGAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * ** * * *
18701 CGTCTTGAATATTTTAAGGAATTGAAGTTATAAAAGAACTCG-ATAGTGTTTTACTAGTTCGAAA
131 CGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTA-AAAGTTTGACAAGTTCGGAA
* *
18765 GTTCATCCAAGAACTAAGAGAG
195 GTTCGTCCAAGAACCAAGAGAG
* * *
18787 CAACAATTCTCACGTAATTAAGTTTTT-ATTCCAAAGACCAAAACTTGTTTTCAAAATGAAAAAC
1 AAACAATTCTCACGTAAATAAGTTTTTAATT-CAAAGACCAAAACTTGTTTACAAAATGAAAAAC
* * * * * *
18851 TATTTAGAGCAAATGATGTGATTTCCCGAGCTTGGAATATTCGAAAAATTGCTCGAAGCAATGTA
65 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * * * * *
18916 TCTTCTTGAATACTTTAAGGAATTGAAGATAT-AAAGAACCCGTAAAAGTTTGACATGTTCGGAT
130 TCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
*
18980 GTTTGTCCAAGAACCAAGAGATG
195 GTTCGTCCAAGAACCAAGAGA-G
* * * * ** * * *
19003 -AACAGTTCTCAAGTAAATAAGTTTTAAATTAAAAGAAAAAAACTTGTTTAGAAATTGAGAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * * *
19067 ATTTAGGCCAAA-GATGCGATTTCCCGAGCATGGAATATTTGAAAAATTGGTTGAAGGAATTGAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* ** * *
19131 CATCTTGAATACTTTAAGGAACCAAAGTTTTAAAAGAACTCGTAAAAGTTTAGACATGTTCGAGA
131 CGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTT-GACAAGTTCG-GA
** *
19196 A-TTTTTCTAAGAACCAAGAGAG
194 AGTTCGTCCAAGAACCAAGAGAG
* * * * * ** *
19218 AAATAATTCTCATGTAAAAAAGTTTTTAGTTCATAGAAAAAAAAACTTGTTTACAAAATAAAAAA
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCA-A-AGACCAAAACTTGTTTACAAAAT-GAAAA
* * * * * *
19283 ACTATTTAGACCAAATGATGTGATTTTCCGAGCATGGAATGTTC-AGAAAACTGCTAGAGGGAGT
63 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAAT
* * * *
19347 TGATCGTCTTGAATACTTTAAGGAACCGAAGATATAAAAGAA-TCCGTAAAAGTTTTGACATGTT
127 GGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACT-CGTAAAAG-TTTGACAAGTT
* * *
19411 CGAAAGTTCGTCCAAGAACTAAGAGAT
190 CGGAAGTTCGTCCAAGAACCAAGAGAG
* *
19438 AAACAATTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTG-TTA-TAAATG-AAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * *
19500 ATTTAGACCAAATGATGCGATTTCTCAAGCATTGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * * *
19565 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC-AACAAAGTTTGACGAGTTTGGAA
131 CGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTA-AAAGTTTGACAAGTTCGGAA
* *
19629 GTTTGTCCAAGAACCAAGAGAA
195 GTTCGTCCAAGAACCAAGAGAG
* * * * ** *
19651 AAACAATTCTCATGTAAATAAGTTTTTAATCCAAAGCCCAAAACTTTTTTTGTAAAATGAAATAC
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC-TTGTTTACAAAATGAAAAAC
* * * * * * * *
19716 TATTTAGACCGAATGATACGATTTCTCGAGCATGGAATGTTTGGAAAACTGTTAGAAGGAATGGA
65 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * * * * *
19781 CCATCTTGAATACTTTAAGGAACGGAAGTTATAAAATAACTCGTAAAAGTTCGAAAAGTTCGGAA
130 TCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
* * *
19846 GTTCGTCTAGGAACCACGAGAG
195 GTTCGTCCAAGAACCAAGAGAG
* * *
19868 AAACAATTCTCACATAAATAAGTTTTTAATTAAAAGAACAAAACTTGTTTACAAAATGAAAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * * *
19933 ATTTAGACAAAAGGATGAGATTTCCCGAGCATGGATTCTTCGAAAAATTG-TCGAAGGAATTGAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
** ** * * * *
19997 TATCCTT-AATACTTTAACCAA-TCAGAGATATAAAAGAAC-CTGT-AAAGTTTGACATGTTCGA
131 CGT-CTTGAATACTTTAAGGAACTGA-AGTTATAAAAGAACTC-GTAAAAGTTTGACAAGTTCGG
* *
20058 AAGTTCGTCCATGAACCAAGAGAT
193 AAGTTCGTCCAAGAACCAAGAGAG
* * * * * *
20082 TAATAATTCTCACATAAATAAGTTTTTAATTAAAAGACCAAACCTTGTTTAAAAAATGAAAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * *
20147 ATTTAGATCGAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAACTGCTAGAAGGAATGGA-
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * *
20211 CTGTCTTAAATACTTTAAGGAACTTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAA
131 C-GTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
20276 GTTCGTCCAAGAACCAAGAGAG
195 GTTCGTCCAAGAACCAAGAGAG
* **
20298 AAACAATTCTCACATAAATAAAATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * ** *
20363 ATTTAGACCAAATAATGCGATTTCCAGAGCATGGAATACTAGAAAAATTGCTCGAAGGAA-GTGA
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG-GA
* ** * ** * *
20427 TCATCTTGAATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGCCAAAGTTTGACAAGTTCAGAT
130 TCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
* * * *
20492 GTTTGT-TAAGGAAACAAGAGGG
195 GTTCGTCCAA-GAACCAAGAGAG
* * *
20514 AAACAATTCTCACATAAATTAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * *
20579 ATTTAAACCAAATGAT-CTGATTTCCCGAGCATGGAATGTTC-ATAAAATTGCTTGAAGAAATGA
66 ATTTAGACCAAATGATGC-GATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGG
* *
20642 ATCGTCTTGAATATTTTAAGGAA-TCGAAGTTATAAAAGAACTCGTAAAAGTTTTGACATGTTCG
129 ATCGTCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAG-TTTGACAAGTTCG
* *
20706 GAAGTTCGTCGAAGAACCAAGAGGG
192 GAAGTTCGTCCAAGAACCAAGAGAG
* ** *
20731 AAACAA-ACTCACG-AAATAAGTTTTTAATT-AATAGAAAAAAAACTTGTTTACAAAATGAAAAT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAA-AG-ACCAAAACTTGTTTACAAAATGAAAAA
* * * * *
20793 CTATTTAGACCAAATGATGCGA-TTCCCGGTGCATGGTATGTTCGAAAAACTACTAGAAGGAATG
64 CTATTTAGACCAAATGATGCGATTTCCC-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * * * *
20857 GACCGTCTTGAATACTTTAAGGAACTGAAGTTAGAAAAGAACTCGTAAAAGTTCGACTAGTTCGA
128 GATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
* * *
20922 AAGTACGTCCAAGAACTAAGAGTG
193 AAGTTCGTCCAAGAACCAAGAGAG
* ** ** *
20946 AAACAATTCTCATGTAAATAAGTTTTTAATTCGTAGAAAAAAACTTCTTTACAAAATGAAAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * * * * *
21011 ATTTAGATCGAATAATGTGATTTCCTGTGCATGGAATGTTCGAAAAACTACTCGAAGGAATGGAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * * * * *
21076 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAATTCATAACAGTTTGACAAGTTCAGAGG
131 CGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* **
21141 TTCGTCTAAGAACCAATTGAG
196 TTCGTCCAAGAACCAAGAGAG
* * * **
21162 AAACAATTCTCACATAAATAAGTTTTTAATTCAAAGGA-CAAAGCTTCTTTACAAAATGACGAAC
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GACCAAAACTTGTTTACAAAATGAAAAAC
* * *
21226 T-TTTGAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGG
65 TATTT-AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* * * * * * *
21290 ATTGCCTTGAATACTCTAAAGAA-TCGTAA-TTATAAAAGAATTCGTAAAAGTTAGACAAGTTCA
129 ATCGTCTTGAATACTTTAAGGAACT-G-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* *
21353 AAAGTTTGTCCAAGAACCAA-A-AG
192 GAAGTTCGTCCAAGAACCAAGAGAG
* * * *
21376 AGACAATTCTCACGTAAATAAGATTTTAATCCAAAGACCAAAACTTGTTTGCAAAATGAAAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* ** * *
21441 ATTTAAATGAAATGATGCGATTTCCCAAGCATGGAATATTC-AGAAAATTGCTCGAAGGAATGGA
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGA
* * * * * *
21505 TCGT-TATAAATAATTTAAGGAAC-CAAATATATAAAAGAAAC-CGTAAATGTTTGACATGTTCG
130 TCGTCT-TGAATACTTTAAGGAACTGAAGT-TATAAAAG-AACTCGTAAAAGTTTGACAAGTTCG
*
21567 GAAGTTCGTCCAAGAACCAAGAGAT
192 GAAGTTCGTCCAAGAACCAAGAGAG
* * * * *
21592 AAACAATTCTCCCGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTTTACGAAATGAAAATCA
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * * *
21657 ATTTAGACCAAAAT-ATGTGATTTCCCAAGCATGGAATATTTGAAAAAATGCTCGAAGGAATTGA
66 ATTTAGACC-AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * * * *
21721 TCGTCTTGAATACTTTAAGG-AGTCGAAGATATAAACGAACTCGTCAAAGTTTGACTAGTTCGGA
130 TCGTCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
*** *
21785 AGTTCGTCCAAGAAATGAGAGGG
194 AGTTCGTCCAAGAACCAAGAGAG
* * * * *
21808 AAACAATTCTCATGTAAATTAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * * *
21873 ATTTAGACCAAATGATGCAATTTCTCGAGAATGCAATGTTCGAAAAATTGCTCAAAGGAAAGGAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * *
21938 CGTCTCGAGTACTTTAAGGAA-TCGAAGTTATAAAAGAACTCGTAAAAGTTTAGACATGTTCGGA
131 CGTCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTT-GACAAGTTCGGA
*
22002 AGTTTGTCCAAGAA-CAATGAGAG
194 AGTTCGTCCAAGAACCAA-GAGAG
* * * * * * * * *
22025 AAACAATTTTCACGTAAATAAGTTTTTAATTCACATA-AAAAACTTGTTGAAAAAATTACAATCT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * * *
22089 ATTTAGTAGACCAAATGATGGGATTTCCCAAGCATGGAACGTTCGGAAAATTGCTAGAAGGAATT
66 A-TT--TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * * * * *
22154 GATCTTCTTGAATACTTTACGGAA-TCGAAGATATAAAAGATCTTGTAAAAGTTTGACATGTTCG
128 GATCGTCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* *
22218 GAAGTTCGTCCAAGAACCAAAAGAT
192 GAAGTTCGTCCAAGAACCAAGAGAG
22243 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * * *
22308 ATTTAGACCAAATGATGCGATTTCCCGACCATGGAATATTCGAAAAATTGCACAAAGAAATTGAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * * *** *
22373 CGTCTTGAATACTTTAAGGAACCGAAGTTGTAAAAGAGCTCACCAAAGTTTGACAAGTTTGGAAG
131 CGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* * *
22438 TTCGTCTAGGAAACAAGAG-G
196 TTCGTCCAAGAACCAAGAGAG
* * * *
22458 AAAACAATTCTCACGTAAATTAGTTTTTAATTTAAAAACCAAAACTTGTTTACAAAATGACAAAC
1 -AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAAC
** * ** * * *
22523 TATTTAGATTAAATGATACGATTTCCCGAGCCCGAAAAGTTCAAAAAATTGCTCGAAGGAATGGA
65 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* ** *
22588 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTATAAAAGTTTTGACATGTTCGGA
130 TCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAG-TTTGACAAGTTCGGA
*
22653 AGTT-GTCCAAGAACCAAGAGGG
194 AGTTCGTCCAAGAACCAAGAGAG
** * * *
22675 AAACAAATT-TCACGTAAATAAGTTTTTAATT-AATAGAAAAAAACTTGTTCAAAAAAATGTAAA
1 AAAC-AATTCTCACGTAAATAAGTTTTTAATTCAA-AGACCAAAACTTGTT-TACAAAATGAAAA
* * * * * *
22738 ACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTTGGAAAACTACT-GAGGGAATG
63 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * * ** * *
22802 GACCGCCTTGAATACATTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTTGGCATGTTCG
128 GATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAG-TTTGACAAGTTCG
22867 GAAGTT-GTCCAAGAACCAAGAGAG
192 GAAGTTCGTCCAAGAACCAAGAGAG
* * ** *
22891 AAACAATTCTCACGTAAATAGGTTTTTAATTCACAGAAAAAAACTTGTTTACAAAATGAAAGA-T
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * * * * *
22955 AATTTAGACCGAGTGATGCGATTTCACGAGCTTGGAATGTTTTGAAAACTT-CTAGAAAGAATGG
66 -ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAAATTGCTCGAAGGAATGG
* * * * * * * * *
23019 TTTGTCTTAAATACTTTAAGGAACCGGAGTTATAAAAGAACTTGTAATAGTTTGAAAAGTTTGGA
129 ATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * *
23084 AGTTCCTTCAAGAACTAAGAGAG
194 AGTTCGTCCAAGAACCAAGAGAG
* * * **
23107 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACCTCTTTACAAAGTGATGAA-T
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * *
23171 TTTTGCGACAAAATGATACAATTTCCCGAGCATGGAA---T-G------T--TCGAAGGAATGGA
66 ATTT-AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * ** ** *
23224 TCGCCTTGAATACTCTAAGGAACCAAAGTTATAAAAGATGTCGTAAAAGTTCGACAAGTTCGGAA
130 TCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
** * *
23289 GTTTTTCCAAGAACAAAAAGAG
195 GTTCGTCCAAGAACCAAGAGAG
* * ** *
23311 AAACAATTCTCACGTAAATAAGATTTTAATCCAAAGACCAAATTTTTTTTACAAAATGAAAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * *
23376 ATTTAGACGAAATGATGCGATTTCCCAAGCATGAAATATTC-AGAAAATTGCTTGAAGGAATGGA
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGA
* * * * * * *
23440 TCATCATAAATACTTTAAGGAA-TCGAAGATATAAAAGAACCCATAAAAGTTTGACACGTTCGGA
130 TCGTCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* *
23504 AGTTCGTCCAAGAACTAAGCG-G
194 AGTTCGTCCAAGAACCAAGAGAG
* * * *
23526 TAAACAATTCTC-CTGTAAATATGTTTTTAATTAAAAGACCAAAACTTGTTTTCGAAATGAGAAA
1 -AAACAATTCTCAC-GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT--G---
* * * * *
23590 AAAAAAACTATTTAGACCAAATTATGCGATTTCCCGTGCATGTAATATTCGAAAAATTGCTAGAA
59 --AAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * *
23655 GGAATTGATCGTCTTGAATACTTTAAGGAA-TCAAAGTTATAAAA-AACTAGTCAAAGTTTGACA
122 GGAATGGATCGTCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * *
23718 AGTTTGGAAGTTCATCCAAGAAACAAGA-AGG
186 AGTTCGGAAGTTCGTCCAAGAACCAAGAGA-G
* * * * *
23749 AAACAATTCACACTTAAA-ATAGTTTTTAATTCAAAGACCAGAACTTGTTTACAACATGACAAAC
1 AAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAAC
* * * *
23813 TATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGAA
65 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * * * *
23878 TCATCTTGAATACTTTAAGGAACTGAAGATATAAAAGAACTCGTCAAAGTTTGACTAGTTTGGAA
130 TCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
* *
23943 GTTCGTCCAAGAAACAAGAGGG
195 GTTCGTCCAAGAACCAAGAGAG
* * * * * * * *
23965 AAACAATTCTCACGGAAATTAGTTTTTAAATCAAAGACTAGAAGTTGTTTACAACATGACAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* *
24030 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTGCTCGATGGAATGGAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * * *
24095 CGTCTTGAATACATTAAGGAA-TCAAAGTTATAAAAGAACTCGTAAAAGTTTAGACATGTTCGAA
131 CGTCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTT-GACAAGTTCGGA
***
24159 AGTTCGTTGGAGAACCAAGAGAG
194 AGTTCGTCCAAGAACCAAGAGAG
* * * * * * * *
24182 AAATAATTTTCATGTAAATGAGTTTTTAATTCACAAGA--AAAACTTGTTGAAAAAATTACAAAC
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCA-AAGACCAAAACTTGTTTACAAAATGAAAAAC
* * * * * *
24245 TATTTAAACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAACTGCTAGAAGGAGTTGA
65 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * * * * * *
24310 TCGTCTTGAATACTTTATGGAACCGAAGATATAAAAGAACCCGTAAAAGTTTGACATGTTTGAAA
130 TCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
* *
24375 GTTCGTCCAGGAACCAAGAGAT
195 GTTCGTCCAAGAACCAAGAGAG
* *
24397 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTG-TTATAAATTG-AAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * *
24460 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTACTCGAAGAAACGAAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * * * * *
24525 AGTCTTGAATACTTTAAGGAA-TCGAAGTTATAATAGAACTCGTCAAAGTTTGTCCAGTTCGAAA
131 CGTCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
24589 GTTCGTCCAAGAACCAAGAGAG
195 GTTCGTCCAAGAACCAAGAGAG
* * * * *
24611 AAACAATTCTCACATAAATAAGTTTCTAATCCAAAGACCAAAACTTGTTTTCAAAATGAAAAATT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* ** * * * * *
24676 ATTTAGAGCAAATGATGCGATTTCTTGAGCTTGGAATATTCGAAAAATTGCTTGAAGCAATGAAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * * *
24741 CATCTTGAATACTTTAAGGAATTGAAGATATAAAAGAACACGTAAAA
131 CGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAA
24788 ATTGTTTACA
Statistics
Matches: 5000, Mismatches: 861, Indels: 278
0.81 0.14 0.05
Matches are distributed among these distances:
204 159 0.03
205 5 0.00
207 1 0.00
211 1 0.00
212 3 0.00
213 80 0.02
214 699 0.14
215 522 0.10
216 2528 0.51
217 439 0.09
218 102 0.02
219 141 0.03
220 138 0.03
221 4 0.00
222 82 0.02
223 95 0.02
224 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
CGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
TTCGTCCAAGAACCAAGAGAG
Found at i:20603 original size:646 final size:648
Alignment explanation
Indices: 18573--24787 Score: 6569
Period size: 646 Copynumber: 9.6 Consensus size: 648
18563 AACTAGGGAT
* *
18573 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTG-TTATAAATTGA-AAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * *
18636 ATTTAGACCAAATGATGGGATTTCCCGAGCATGGAGTGTTCGAAAAATTGCTCGAAGCAATTGAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATTGAT
* * * ** *
18701 CGTCTTGAATATTTTAAGGAATTGAAGTTATAAAAGAACTCG-ATAGTGTTTTAC-TAGTTCGAA
131 CATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTA-AAAGTTTGACAT-GTTCGAA
* * * *
18764 AGTTCATCCAAGAACTAAGAGAGCAACAATTCTCACGTAATTAAGTTTTT-ATTCCAAAGACCAA
194 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT-CAAAGACCAA
* * * * * *
18828 AACTTGTTTTCAAAATGAAAAACTATTTAGAGCAAATGATGTGATTTCCCGAGCTTGGAATATTC
258 AACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
* * * * *
18893 GAAAAATTGCTCGAAGCAATGTA-TCTTCTTGAATACTTTAAGGAATTGAAGATAT-AAAGAACC
323 GAAAAATTGCTCGAAGGAATGGACTCGTCTTGAATACTTTAAGGAA-TGAAGTTATAAAAGAACT
* * * *
18956 CGTAAAAGTTTGACATGTTCGGATGTTTGTCCAAGAACCAAGAGATG-AACAGTTCTCAAGTAAA
387 CGTAAAAGTTTGACATGTTCGGAAGTTCGTCCAAGAACCAAGAGA-GAAACAATTCTCACGTAAA
* * ** * * * *
19020 TAAGTTTTAAATTAAAAGAAAAAAACTTGTTTAGAAATTGAGAAACTATTTAGGCCAAA-GATGC
451 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGC
* * * * *
19084 GATTTCCCGAGCATGGAATATTTGAAAAATTGGTTGAAGGAATTGATCATCTTGAATACTTTAAG
516 GATTTCCAGAGCATGGAATATTCGAAAAATTGCTAGAAGGAATTGATCGTCTTGAATACTTTAAG
* * * * ** *
19149 GAACCAAAGTTTTAAAAGAACTCGTAAAAGTTTAGACATGTTCGAGAA-TTTTTCTAAGAACCAA
581 GAACCGAAGTTATAAAAGAACTCGTCAAAGTTT-GACAAGTTCG-GAAGTTCGTCTAAGAAACAA
19213 GAGAG
644 GAGAG
* * * * * ** * *
19218 AAATAATTCTCATGTAAAAAAGTTTTTAGTTCATAGAAAAAAAAACTTGTTTACAAAATAAAAAA
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCA-A-AGACCAAAACTTGTTTACAAAAT-GACAA
* * * * * *
19283 ACTATTTAGACCAAATGATGTGATTTTCCGAGCATGGAATGTTC-AGAAAACTGCTAGAGGGAGT
63 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAAT
* * *
19347 TGATCGTCTTGAATACTTTAAGGAACCGAAGATATAAAAGAA-TCCGTAAAAGTTTTGACATGTT
127 TGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACT-CGTAAAAG-TTTGACATGTT
* * *
19411 CGAAAGTTCGTCCAAGAACTAAGAGATAAACAATTCTCACGTAAATTAGTTTTTAATTCAAAGAC
190 CGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * *
19476 CAAAACTTG-TTA-TAAATG-AAAACTATTTAGACCAAATGATGCGATTTCTCAAGCATTGAATG
255 CAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATG
*
19538 TTCGAAAAATTGCTCGAAGGAATGGA-TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
320 TTCGAAAAATTGCTCGAAGGAATGGACTCGTCTTGAATACTTTAAGGAA-TGAAGTTATAAAAGA
* * * * *
19602 ACTC-AACAAAGTTTGACGA-GTTTGGAAGTTTGTCCAAGAACCAAGAGAAAAACAATTCTCATG
384 ACTCGTA-AAAGTTTGAC-ATGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * ** * *
19665 TAAATAAGTTTTTAATCCAAAGCCCAAAACTTTTTTTGTAAAATGAAATACTATTTAGACCGAAT
447 TAAATAAGTTTTTAATTCAAAGACCAAAAC-TTGTTTACAAAATGAAAAACTATTTAGACCAAAT
* * * * * * * * *
19730 GATACGATTTCTC-GAGCATGGAATGTTTGGAAAACTGTTAGAAGGAATGGACCATCTTGAATAC
511 GATGCGATTTC-CAGAGCATGGAATATTCGAAAAATTGCTAGAAGGAATTGATCGTCTTGAATAC
* * * * * *
19794 TTTAAGGAACGGAAGTTATAAAATAACTCGTAAAAGTTCGAAAAGTTCGGAAGTTCGTCTAGGAA
575 TTTAAGGAACCGAAGTTATAAAAGAACTCGTCAAAGTTTGACAAGTTCGGAAGTTCGTCTAAGAA
* *
19859 CCACGAGAG
640 ACAAGAGAG
* * * *
19868 AAACAATTCTCACATAAATAAGTTTTTAATTAAAAGAACAAAACTTGTTTACAAAATGAAAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * * * *
19933 ATTTAGACAAAAGGATGAGATTTCCCGAGCATGGATTCTTCGAAAAATTG-TCGAAGGAATTGAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATTGAT
* ** *
19997 TATCCTT-AATACTTTAACCAATC-AGAGATATAAAAGAAC-CTGT-AAAGTTTGACATGTTCGA
131 CAT-CTTGAATACTTTAAGGAATCGA-AGTTATAAAAGAACTC-GTAAAAGTTTGACATGTTCGA
* ** * * *
20058 AAGTTCGTCCATGAACCAAGAGATTAATAATTCTCACATAAATAAGTTTTTAATTAAAAGACCAA
193 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * *
20123 ACCTTGTTTAAAAAATGAAAAACTATTTAGATCGAATGATGCGATTTCCCAAGCATGGAATGTTC
258 AACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
* * * *
20188 GAAAAACTGCTAGAAGGAATGGACT-GTCTTAAATACTTTAAGGAACTTAAGTTATAAAAGAACT
323 GAAAAATTGCTCGAAGGAATGGACTCGTCTTGAATACTTTAAGGAA-TGAAGTTATAAAAGAACT
* * *
20252 CGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
387 CGTAAAAGTTTGACATGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
** *
20317 AAAATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATAATGCG
452 AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCG
* * * * *
20382 ATTTCCAGAGCATGGAATACTAGAAAAATTGCTCGAAGGAAGTGATCATCTTGAATACTTTAAGG
517 ATTTCCAGAGCATGGAATATTCGAAAAATTGCTAGAAGGAATTGATCGTCTTGAATACTTTAAGG
* * * * * *
20447 AACCAAAGTTGTAAAAGAACTCGCCAAAGTTTGACAAGTTCAGATGTTTGT-TAAGGAAACAAGA
582 AACCGAAGTTATAAAAGAACTCGTCAAAGTTTGACAAGTTCGGAAGTTCGTCTAA-GAAACAAGA
*
20511 GGG
646 GAG
* *
20514 AAACAATTCTCACATAAATTAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * *
20579 ATTTAAACCAAATGAT-CTGATTTCCCGAGCATGGAATGTTC-ATAAAATTGCTTGAA-GAAATG
66 ATTTAGACCAAATGATGC-GATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATTG
* *
20641 AATCGTCTTGAATATTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTTGACATGTTCG
129 -ATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAG-TTTGACATGTTCG
* * * * *
20706 GAAGTTCGTCGAAGAACCAAGAGGGAAACAA-ACTCACG-AAATAAGTTTTTAATT-AATAGAAA
192 AAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA-AG-AC
* * ** *
20768 AAAAACTTGTTTACAAAATGAAAATCTATTTAGACCAAATGATGCGA-TTCCCGGTGCATGGTAT
255 CAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCC-AAGCATGGAAT
* * * *
20832 GTTCGAAAAACTACTAGAAGGAATGGAC-CGTCTTGAATACTTTAAGGAACTGAAGTTAGAAAAG
319 GTTCGAAAAATTGCTCGAAGGAATGGACTCGTCTTGAATACTTTAAGGAA-TGAAGTTATAAAAG
* * * * * *
20896 AACTCGTAAAAGTTCGAC-TAGTTCGAAAGTACGTCCAAGAACTAAGAGTGAAACAATTCTCATG
383 AACTCGTAAAAGTTTGACAT-GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
** ** * * * *
20960 TAAATAAGTTTTTAATTCGTAGAAAAAAACTTCTTTACAAAATGAAAAACTATTTAGATCGAATA
447 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATG
* * * * * * * *
21025 ATGTGATTTCCTGTGCATGGAATGTTCGAAAAACTACTCGAAGGAATGGATCGTCTTGAATACTT
512 ATGCGATTTCCAGAGCATGGAATATTCGAAAAATTGCTAGAAGGAATTGATCGTCTTGAATACTT
* * * * *
21090 TAAGGAACCGAAGTTATAAAAGAATTCAT-AACAGTTTGACAAGTTCAGAGGTTCGTCTAAGAAC
577 TAAGGAACCGAAGTTATAAAAGAACTCGTCAA-AGTTTGACAAGTTCGGAAGTTCGTCTAAGAAA
**
21154 CAATTGAG
641 CAAGAGAG
* * * *
21162 AAACAATTCTCACATAAATAAGTTTTTAATTCAAAGGA-CAAAGCTTCTTTACAAAATGACGAAC
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GACCAAAACTTGTTTACAAAATGACAAAC
* * * *
21226 T-TTTGAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGG
65 TATTT-AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATTG
*** * * * * * *
21290 ATTGCCTTGAATACTCTAAAGAATCGTAA-TTATAAAAGAATTCGTAAAAGTTAGACAAGTTCAA
129 ATCATCTTGAATACTTTAAGGAATCG-AAGTTATAAAAGAACTCGTAAAAGTTTGACATGTTCGA
* * * *
21354 AAGTTTGTCCAAGAACCAA-A-AGAGACAATTCTCACGTAAATAAGATTTTAATCCAAAGACCAA
193 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * ** *
21417 AACTTGTTTGCAAAATGAAAAACTATTTAAATGAAATGATGCGATTTCCCAAGCATGGAATATTC
258 AACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
* * ** *
21482 -AGAAAATTGCTCGAAGGAATGGA-TCGT-TATAAATAATTTAAGGAACCAAATATATAAAAGAA
323 GA-AAAATTGCTCGAAGGAATGGACTCGTCT-TGAATACTTTAAGGAATGAAGT-TATAAAAG-A
* * *
21544 AC-CGTAAATGTTTGACATGTTCGGAAGTTCGTCCAAGAACCAAGAGATAAACAATTCTCCCGTA
384 ACTCGTAAAAGTTTGACATGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* * * *
21608 AATAAGTTTTTAATTAAAAGACCAAAACTTGTTTACGAAATGAAAATCAATTTAGACCAAAAT-A
449 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACC-AAATGA
* * * *
21672 TGTGATTTCCCA-AGCATGGAATATTTGAAAAAATGCTCGAAGGAATTGATCGTCTTGAATACTT
513 TGCGATTT-CCAGAGCATGGAATATTCGAAAAATTGCTAGAAGGAATTGATCGTCTTGAATACTT
** * * * * *
21736 TAAGGAGTCGAAGATATAAACGAACTCGTCAAAGTTTGACTAGTTCGGAAGTTCGTCCAAGAAAT
577 TAAGGAACCGAAGTTATAAAAGAACTCGTCAAAGTTTGACAAGTTCGGAAGTTCGTCTAAGAAAC
* *
21801 GAGAGGG
642 AAGAGAG
* * * *
21808 AAACAATTCTCATGTAAATTAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * * * * **
21873 ATTTAGACCAAATGATGCAATTTCTCGAGAATGCAATGTTCGAAAAATTGCTCAAAGGAAAGGAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATTGAT
* * * *
21938 CGTCTCGAGTACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTAGACATGTTCGGAA
131 CATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTT-GACATGTTCGAAA
* * * * *
22003 GTTTGTCCAAGAA-CAATGAGAGAAACAATTTTCACGTAAATAAGTTTTTAATTCACATA-AAAA
195 GTTCGTCCAAGAACCAA-GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * * * *
22066 ACTTGTTGAAAAAATTACAATCTATTTAGTAGACCAAATGATGGGATTTCCCAAGCATGGAACGT
259 ACTTGTTTACAAAATGAAAAACTA-TT--TAGACCAAATGATGCGATTTCCCAAGCATGGAATGT
* * * * * * *
22131 TCGGAAAATTGCTAGAAGGAATTGA-TCTTCTTGAATACTTTACGGAATCGAAGATATAAAAGAT
321 TCGAAAAATTGCTCGAAGGAATGGACTCGTCTTGAATACTTTAAGGAAT-GAAGTTATAAAAGAA
* * *
22195 CTTGTAAAAGTTTGACATGTTCGGAAGTTCGTCCAAGAACCAAAAGATAAACAATTCTCACGTAA
385 CTCGTAAAAGTTTGACATGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
22260 ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATG
450 ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATG
* * * *
22325 CGATTTCCCGACCATGGAATATTCGAAAAATTGC-ACAAAGAAATTGATCGTCTTGAATACTTTA
515 CGATTTCCAGAGCATGGAATATTCGAAAAATTGCTA-GAAGGAATTGATCGTCTTGAATACTTTA
* * ** * *
22389 AGGAACCGAAGTTGTAAAAGAGCTCACCAAAGTTTGACAAGTTTGGAAGTTCGTCTAGGAAACAA
579 AGGAACCGAAGTTATAAAAGAACTCGTCAAAGTTTGACAAGTTCGGAAGTTCGTCTAAGAAACAA
22454 GAG-G
644 GAGAG
* * *
22458 AAAACAATTCTCACGTAAATTAGTTTTTAATTTAAAAACCAAAACTTGTTTACAAAATGACAAAC
1 -AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
** * ** * * * *
22523 TATTTAGATTAAATGATACGATTTCCCGAGCCCGAAAAGTTCAAAAAATTGCTCGAAGGAATGGA
65 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATTGA
* * ** *
22588 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTATAAAAGTTTTGACATGTTCGGA
130 TCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAG-TTTGACATGTTCGAA
* **
22653 AGTT-GTCCAAGAACCAAGAGGGAAACAAATT-TCACGTAAATAAGTTTTTAATT-AATAGAAAA
194 AGTTCGTCCAAGAACCAAGAGAGAAAC-AATTCTCACGTAAATAAGTTTTTAATTCAA-AGACCA
* * * **
22715 AAACTTGTTCAAAAAAATGTAAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGT
257 AAACTTGTT-TACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGT
* * * * * * * **
22780 TTGGAAAACTACT-GAGGGAATGGAC-CGCCTTGAATACATTAAGGAACAAAAGTTATAAAAGAA
321 TCGAAAAATTGCTCGAAGGAATGGACTCGTCTTGAATACTTTAAGGAA-TGAAGTTATAAAAGAA
*
22843 CTCGTAAAAGTTTTGGCATGTTCGGAAGTT-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
385 CTCGTAAAAG-TTTGACATGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* * ** * * *
22907 AATAGGTTTTTAATTCACAGAAAAAAACTTGTTTACAAAATGAAAGA-TAATTTAGACCGAGTGA
449 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT-ATTTAGACCAAATGA
* * * * * * * * *
22971 TGCGATTT-CACGAGCTTGGAATGTTTTGAAAACTT-CTAGAAAGAATGGTTTGTCTTAAATACT
513 TGCGATTTCCA-GAGCATGGAAT-ATTCGAAAAATTGCTAGAAGGAATTGATCGTCTTGAATACT
* * * * *
23034 TTAAGGAACCGGAGTTATAAAAGAACTTGT-AATAGTTTGAAAAGTTTGGAAGTTCCT-TCAAG-
576 TTAAGGAACCGAAGTTATAAAAGAACTCGTCAA-AGTTTGACAAGTTCGGAAGTTCGTCT-AAGA
23096 AACTAAGAGAG
639 AAC-AAGAGAG
* * * **
23107 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACCTCTTTACAAAGTGATGAA-T
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * * * * *
23171 TTTTGCGACAAAATGATACAATTTCCCGAGCATGGAATGTTCG---AA--G---GAATGG-ATCG
66 ATTT-AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA-GGAATTG
* * * ** * * *
23227 --C--CTTGAATACTCTAAGGAACCAAAGTTATAAAAGATGTCGTAAAAGTTCGACAAGTTCGGA
129 ATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACATGTTCGAA
** * * * *
23288 AGTTTTTCCAAGAACAAAAAGAGAAACAATTCTCACGTAAATAAGATTTTAATCCAAAGACCAAA
194 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
** * * * *
23353 TTTTTTTTACAAAATGAAAAACTATTTAGACGAAATGATGCGATTTCCCAAGCATGAAATATTC-
259 ACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCG
* * * * * *
23417 AGAAAATTGCTTGAAGGAATGGA-TCATCATAAATACTTTAAGGAATCGAAGATATAAAAGAACC
324 A-AAAATTGCTCGAAGGAATGGACTCGTCTTGAATACTTTAAGGAAT-GAAGTTATAAAAGAACT
* * * *
23481 CATAAAAGTTTGACACGTTCGGAAGTTCGTCCAAGAACTAAGCG-GTAAACAATTCTC-CTGTAA
387 CGTAAAAGTTTGACATGTTCGGAAGTTCGTCCAAGAACCAAGAGAG-AAACAATTCTCAC-GTAA
* * * *
23544 ATATGTTTTTAATTAAAAGACCAAAACTTGTTTTCGAAATGAGAAAAAAAAAACTATTTAGACCA
450 ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT--G-----AAAAACTATTTAGACCA
* * * *
23609 AATTATGCGATTTCCCGTGCATGTAATATTCGAAAAATTGCTAGAAGGAATTGATCGTCTTGAAT
508 AATGATGCGATTTCCAGAGCATGGAATATTCGAAAAATTGCTAGAAGGAATTGATCGTCTTGAAT
* * * * * *
23674 ACTTTAAGGAATCAAAGTTATAAAA-AACTAGTCAAAGTTTGACAAGTTTGGAAGTTCATCCAAG
573 ACTTTAAGGAACCGAAGTTATAAAAGAACTCGTCAAAGTTTGACAAGTTCGGAAGTTCGTCTAAG
23738 AAACAAGA-AGG
638 AAACAAGAGA-G
* * * *
23749 AAACAATTCACACTTAAA-ATAGTTTTTAATTCAAAGACCAGAACTTGTTTACAACATGACAAAC
1 AAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * *
23813 TATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAA-TGA
65 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATTG-
* * *
23877 ATCATCTTGAATACTTTAAGGAA-CTGAAGATATAAAAGAACTCGTCAAAGTTTGAC-TAGTTTG
129 ATCATCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAT-GTTCG
* * * * * * *
23940 GAAGTTCGTCCAAGAAACAAGAGGGAAACAATTCTCACGGAAATTAGTTTTTAAATCAAAGACTA
192 AAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * *
24005 GAAGTTGTTTACAACATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
257 AAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTT
* * * *
24070 TGAAAAATTGCTCGATGGAATGGA-TCGTCTTGAATACATTAAGGAATCAAAGTTATAAAAGAAC
322 CGAAAAATTGCTCGAAGGAATGGACTCGTCTTGAATACTTTAAGGAAT-GAAGTTATAAAAGAAC
* *** * * *
24134 TCGTAAAAGTTTAGACATGTTCGAAAGTTCGTTGGAGAACCAAGAGAGAAATAATTTTCATGTAA
386 TCGTAAAAGTTT-GACATGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
* * * * * *
24199 ATGAGTTTTTAATTCACAAGA--AAAACTTGTTGAAAAAATTACAAACTATTTAAACCAAATGAT
450 ATAAGTTTTTAATTCA-AAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGAT
* * *
24262 GCGATTTCTC-GAGCATGGAATGTTCGAAAAACTGCTAGAAGGAGTTGATCGTCTTGAATACTTT
514 GCGATTTC-CAGAGCATGGAATATTCGAAAAATTGCTAGAAGGAATTGATCGTCTTGAATACTTT
* * * * * * * * * *
24326 ATGGAACCGAAGATATAAAAGAACCCGTAAAAGTTTGACATGTTTGAAAGTTCGTCCAGGAACCA
578 AAGGAACCGAAGTTATAAAAGAACTCGTCAAAGTTTGACAAGTTCGGAAGTTCGTCTAAGAAACA
*
24391 AGAGAT
643 AGAGAG
* *
24397 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTG-TTATAAATTGA-AAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * **
24460 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTACTCGAA-GAAACGAA
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATTG-A
* * *
24524 T-AGTCTTGAATACTTTAAGGAATCGAAGTTATAATAGAACTCGTCAAAGTTTGTCCA-GTTCGA
130 TCA-TCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTG-ACATGTTCGA
* * *
24587 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTCTAATCCAAAGACCAA
193 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * *** * *
24652 AACTTGTTTTCAAAATGAAAAATTATTTAGAGCAAATGATGCGATTTCTTGAGCTTGGAATATTC
258 AACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
* * * * * *
24717 GAAAAATTGCTTGAAGCAAT-GAATCATCTTGAATACTTTAAGGAATTGAAGATATAAAAGAACA
323 GAAAAATTGCTCGAAGGAATGGACTCGTCTTGAATACTTTAAGGAA-TGAAGTTATAAAAGAACT
24781 CGTAAAA
387 CGTAAAA
24788 ATTGTTTACA
Statistics
Matches: 4660, Mismatches: 748, Indels: 323
0.81 0.13 0.06
Matches are distributed among these distances:
635 95 0.02
636 196 0.04
637 2 0.00
638 2 0.00
640 6 0.00
641 4 0.00
642 129 0.03
643 84 0.02
644 79 0.02
645 67 0.01
646 1029 0.22
647 501 0.11
648 1018 0.22
649 253 0.05
650 232 0.05
651 649 0.14
652 24 0.01
653 1 0.00
654 231 0.05
655 53 0.01
656 5 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (648 bp):
AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATTGAT
CATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACATGTTCGAAAG
TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC
TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAA
AAATTGCTCGAAGGAATGGACTCGTCTTGAATACTTTAAGGAATGAAGTTATAAAAGAACTCGTA
AAAGTTTGACATGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTT
CCAGAGCATGGAATATTCGAAAAATTGCTAGAAGGAATTGATCGTCTTGAATACTTTAAGGAACC
GAAGTTATAAAAGAACTCGTCAAAGTTTGACAAGTTCGGAAGTTCGTCTAAGAAACAAGAGAG
Found at i:20682 original size:432 final size:430
Alignment explanation
Indices: 18573--26787 Score: 6586
Period size: 432 Copynumber: 18.7 Consensus size: 430
18563 AACTAGGGAT
* *
18573 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTG-TTATAAATTG-AAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * *
18636 ATTTAGACCAAATGATGGGATTTCCCGAGCATGGAGTGTTCGAAAAATTGCTCGAAGCAATTGAT
66 ATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA-TGAT
* ** ** * * *
18701 CGTCTTGAATATTTTAAGGAATTGAAGTTATAAAAGAACTCG-ATAGTGTTTTACTAGTTCGAAA
130 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA-AAAGTTTGACAAGTTCGGAA
* * *
18765 GTTCATCCAAG-AACTAAGAGAGCAACAATTCTCACGTAATTAAGTTTTT-ATTCCAAAGACCAA
194 GTTCGTCCAAGAAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT-CAAAGACCAA
* * * * *
18828 AACTTGTTTTCAAAATGAAAAACTATTTAGAGCAAATGATGTGATTTCCCGAGCTTGGAATATTC
257 AACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * * *
18893 GAAAAATTGCTCGAAGCAATGTATCTTCTTGAATACTTTAAGGAATTGAAGATAT-AAAGAACCC
322 -AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTC
* * *
18957 GTAAAAGTTTGACATGTTCGGATGTTTGTCCAAGAACCAAGAGATG
386 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA-G
* * * * ** * * *
19003 -AACAGTTCTCAAGTAAATAAGTTTTAAATTAAAAGAAAAAAACTTGTTTAGAAATTGAGAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * * *
19067 ATTTAGGCCAAA-GATGCGATTTCCCGAGCATGGAATATTTGAAAAATTGGTTGAAGGAATTGAT
66 ATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA-TGAT
* * * *
19131 CATCTTGAATACTTTAAGGAACCAAAGTTTTAAAAGAACTCGTAAAAGTTTAGACATGTTCGAGA
130 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTT-GACAAGTTCG-GA
** * * * * * * * **
19196 A-TTTTTCTAAGAACCAAGAGAGAAATAATTCTCATGTAAAAAAGTTTTTAGTTCATAGAAAAAA
193 AGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA-A-AGACCA
* * *
19260 AAACTTGTTTACAAAATAAAAAAACTATTTAGACCAAATGATGTGATTTTCCGAGCATGGAATGT
256 AAACTTGTTTACAAAAT-GAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * *
19325 TCAGAAAACTGCTAGAGGGAGTTGATCGTCTTGAATACTTTAAGGAACCGAAGATATAAAAGAA-
320 TCA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAAC
* * * *
19389 TCCGTAAAAGTTTTGACATGTTCGAAAGTTCGTCCAAGAACTAAGAGAT
384 T-CGTAAAAG-TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* *
19438 AAACAATTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTG-TTA-TAAATG-AAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
*
19500 ATTTAGACCAAATGATGCGATTTCTCA-AGCATTGAATGTTCGAAAAATTGCTCGAAGGAATGGA
66 ATTTAGACCAAATGATGCGATTTC-CAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT-GA
* * *
19564 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC-AACAAAGTTTGACGAGTTTGGA
129 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA-AAAGTTTGACAAGTTCGGA
* * * * * *
19628 AGTTTGTCCAAGAACCAAGAGAAAAACAATTCTCATGTAAATAAGTTTTTAATCCAAAGCCCAAA
193 AGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* ** * * * *
19693 ACTTTTTTTGTAAAATGAAATACTATTTAGACCGAATGATACGATTTCTCGAGCATGGAATGTTT
258 AC-TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TT
** * * * * * *
19758 GGAAAACTGTTAGAAGGAATGGACCATCTTGAATACTTTAAGGAA-CGGAAGTTATAAAATAACT
321 CAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACT
* * * * *
19822 CGTAAAAGTTCGAAAAGTTCGGAAGTTCGTCTAGGAACCACGAGAG
385 CGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* * *
19868 AAACAATTCTCACATAAATAAGTTTTTAATTAAAAGAACAAAACTTGTTTACAAAATGAAAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * * *
19933 ATTTAGACAAAAGGATGAGATTTCCCGAGCATGGATTCTTCGAAAAATTG-TCGAAGGAATTGAT
66 ATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA-TGAT
** ** * * * *
19997 TATCCTT-AATACTTTAACCAATC-AGAGATATAAAAGAAC-CTGT-AAAGTTTGACATGTTCGA
130 CGT-CTTGAATACTTTAAGGAACCGA-AGTTATAAAAGAACTC-GTAAAAGTTTGACAAGTTCGG
* * ** * * *
20058 AAGTTCGTCCATGAACCAAGAGATTAATAATTCTCACATAAATAAGTTTTTAATTAAAAGACCAA
192 AAGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * *
20123 ACCTTGTTTAAAAAATGAAAAACTATTTAGATCGAATGATGCGATTTCCCAAGCATGGAATGTTC
257 AACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * *
20188 GAAAAACTGCTAGAAGGAATGGA-CTGTCTTAAATACTTTAAGGAA-CTTAAGTTATAAAAGAAC
322 -AAAAATTGCTCGAAGGAATGGATC-GTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAAC
*
20251 TCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAG
384 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* **
20298 AAACAATTCTCACATAAATAAAATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* ** *
20363 ATTTAGACCAAATAATGCGATTTCCAGAGCATGGAATACTAGAAAAATTGCTCGAAGGAAGTGAT
66 ATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA-TGAT
* * * ** * *
20428 CATCTTGAATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGCCAAAGTTTGACAAGTTCAGATG
130 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* * * * *
20493 TTTGT-TAAGGAAACAAGAGGGAAACAATTCTCACATAAATTAGTTTTTAATTCAAAGACCAAAA
195 TTCGTCCAA-GAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* *
20557 CTTGTTTACAAAATGACAAACTATTTAAACCAAATGAT-CTGATTTCCCGAGCATGGAATGTTCA
259 CTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGC-GATTTCCCGAGCATGGAATGTTCA
* * * *
20621 TAAAATTGCTTGAAGAAATGAATCGTCTTGAATATTTTAAGGAATCGAAGTTATAAAAGAACTCG
323 -AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
* * *
20686 TAAAAGTTTTGACATGTTCGGAAGTTCGTCGAAGAACCAAGAGGG
387 TAAAAG-TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* ** *
20731 AAACAA-ACTCACG-AAATAAGTTTTTAATT-AATAGAAAAAAAACTTGTTTACAAAATGAAAAT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAA-AG-ACCAAAACTTGTTTACAAAATGAAAAA
* * * * * * *
20793 CTATTTAGACCAAATGATGCGATTCCCGGTGCATGGTATGTTCGAAAAACTACTAGAAGGAATGG
64 CTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT-G
* * * * * *
20858 ACCGTCTTGAATACTTTAAGGAACTGAAGTTAGAAAAGAACTCGTAAAAGTTCGACTAGTTCGAA
128 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * * ** **
20923 AGTACGTCCAAG-AACTAAGAGTGAAACAATTCTCATGTAAATAAGTTTTTAATTCGTAGAAAAA
193 AGTTCGTCCAAGAAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * * *
20987 AACTTCTTTACAAAATGAAAAACTATTTAGATCGAATAATGTGATTTCCTGTGCATGGAATGTTC
257 AACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * *
21052 GAAAAACTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAATTC
322 -AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTC
* * * * * **
21117 ATAACAGTTTGACAAGTTCAGAGGTTCGTCTAAGAACCAATTGAG
386 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* * * **
21162 AAACAATTCTCACATAAATAAGTTTTTAATTCAAAGGA-CAAAGCTTCTTTACAAAATGACGAAC
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GACCAAAACTTGTTTACAAAATGAAAAAC
* * * *
21226 T-TTTGAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGG
65 TATTT-AGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT-G
* * * * * * * **
21290 ATTGCCTTGAATACTCTAAAGAATCGTAA-TTATAAAAGAATTCGTAAAAGTTAGACAAGTTCAA
128 ATCGTCTTGAATACTTTAAGGAACCG-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
* * * * *
21354 AAGTTTGTCCAAGAACCAA-A-AGAGACAATTCTCACGTAAATAAGATTTTAATCCAAAGACCAA
192 AAGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * ** * *
21417 AACTTGTTTGCAAAATGAAAAACTATTTAAATGAAATGATGCGATTTCCCAAGCATGGAATATTC
257 AACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * *
21482 AGAAAATTGCTCGAAGGAATGGATCGT-TATAAATAATTTAAGGAA-CCAAATATATAAAAGAAA
322 A-AAAATTGCTCGAAGGAATGGATCGTCT-TGAATACTTTAAGGAATCGAAGT-TATAAAAG-AA
* * *
21545 C-CGTAAATGTTTGACATGTTCGGAAGTTCGTCCAAGAACCAAGAGAT
383 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* * * * *
21592 AAACAATTCTCCCGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTTTACGAAATGAAAATCA
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * *
21657 ATTTAGACCAAAAT-ATGTGATTTCCCA-AGCATGGAATATTTGAAAAAATGCTCGAAGGAATTG
66 ATTTAGACC-AAATGATGCGATTT-CCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA-TG
** * * * *
21720 ATCGTCTTGAATACTTTAAGGAGTCGAAGATATAAACGAACTCGTCAAAGTTTGACTAGTTCGGA
128 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
** * * *
21785 AGTTCGTCCAAGAAATGAGAGGGAAACAATTCTCATGTAAATTAGTTTTTAATTCAAAGACCAAA
193 AGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * * * *
21850 AGTTGTTTATAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGAATGCAATGTTCG
258 ACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-
* * * *
21915 AAAAATTGCTCAAAGGAAAGGATCGTCTCGAGTACTTTAAGGAATCGAAGTTATAAAAGAACTCG
322 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
* *
21980 TAAAAGTTTAGACATGTTCGGAAGTTTGTCCAAGAA-CAATGAGAG
387 TAAAAGTTT-GACAAGTTCGGAAGTTCGTCCAAGAACCAA-GAGAG
* * * * * * * * *
22025 AAACAATTTTCACGTAAATAAGTTTTTAATTCACATA-AAAAACTTGTTGAAAAAATTACAATCT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * *
22089 ATTTAGTAGACCAAATGATGGGATTTCCCA-AGCATGGAACGTTCGGAAAATTGCTAGAAGGAAT
66 A-TT--TAGACCAAATGATGCGATTT-CCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA-
* * * * * * *
22153 TGATCTTCTTGAATACTTTACGGAATCGAAGATATAAAAGATCTTGTAAAAGTTTGACATGTTCG
126 TGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * *
22218 GAAGTTCGTCCAAGAACCAAAAGATAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
191 GAAGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* *
22283 AAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGACCATGGAATATT
256 AAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * * * * *
22348 CGAAAAATTGCACAAAGAAATTGATCGTCTTGAATACTTTAAGGAACCGAAGTTGTAAAAGAGCT
321 C-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACT
*** * * * *
22413 CACCAAAGTTTGACAAGTTTGGAAGTTCGTCTAGGAAACAAGAG-G
385 CGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* * * *
22458 AAAACAATTCTCACGTAAATTAGTTTTTAATTTAAAAACCAAAACTTGTTTACAAAATGACAAAC
1 -AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAAC
** * * ** * * *
22523 TATTTAGATTAAATGATACGATTTCCCGAGCCCGAAAAGTTCAAAAAATTGCTCGAAGGAATGGA
65 TATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT-GA
** *
22588 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTATAAAAGTTTTGACATGTTCGGA
129 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG-TTTGACAAGTTCGGA
* * **
22653 AGTT-GTCCAAGAACCAAGAGGGAAACAAATT-TCACGTAAATAAGTTTTTAATT-AATAGAAAA
193 AGTTCGTCCAAGAAACAAGAGAGAAAC-AATTCTCACGTAAATAAGTTTTTAATTCAA-AGACCA
* * * *
22715 AAACTTGTTCAAAAAAATGTAAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGT
256 AAACTTGTT-TACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-
** * * * * * * *
22780 TTGGAAAACTACT-GAGGGAATGGACCGCCTTGAATACATTAAGGAA-CAAAAGTTATAAAAGAA
319 TTCAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAA
* *
22843 CTCGTAAAAGTTTTGGCATGTTCGGAAGTT-GTCCAAGAACCAAGAGAG
383 CTCGTAAAAG-TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* * ** *
22891 AAACAATTCTCACGTAAATAGGTTTTTAATTCACAGAAAAAAACTTGTTTACAAAATGAAAGA-T
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * * * *
22955 AATTTAGACCGAGTGATGCGATTT-CACGAGCTTGGAATGTTTTGAAAACTT-CTAGAAAGAATG
66 -ATTTAGACCAAATGATGCGATTTCCA-GAGCATGGAATG-TTCGAAAAATTGCTCGAAGGAAT-
* * * * * * * *
23018 GTTTGTCTTAAATACTTTAAGGAACCGGAGTTATAAAAGAACTTGTAATAGTTTGAAAAGTTTGG
127 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
* *
23083 AAGTTCCTTCAAG-AACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
192 AAGTTCGTCCAAGAAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * ** * * * * *
23147 AAACCTCTTTACAAAGTGATGAA-TTTTTGCGACAAAATGATACAATTTCCCGAGCATGGAATG-
256 AAACTTGTTTACAAAATGAAAAACTATTT-AGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * **
23210 --------T--TCGAAGGAATGGATCGCCTTGAATACTCTAAGGAACCAAAGTTATAAAAGATGT
320 TCAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACT
* ** * *
23265 CGTAAAAGTTCGACAAGTTCGGAAGTTTTTCCAAGAACAAAAAGAG
385 CGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* * ** *
23311 AAACAATTCTCACGTAAATAAGATTTTAATCCAAAGACCAAATTTTTTTTACAAAATGAAAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * *
23376 ATTTAGACGAAATGATGCGATTTCCCA-AGCATGAAATATTC-AGAAAATTGCTTGAAGGAATGG
66 ATTTAGACCAAATGATGCGATTT-CCAGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAAT-G
* * * * * * * *
23439 ATCATCATAAATACTTTAAGGAATCGAAGATATAAAAGAACCCATAAAAGTTTGACACGTTCGGA
128 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * *
23504 AGTTCGTCCAAG-AACTAAGCG-GTAAACAATTCTC-CTGTAAATATGTTTTTAATTAAAAGACC
193 AGTTCGTCCAAGAAAC-AAGAGAG-AAACAATTCTCAC-GTAAATAAGTTTTTAATTCAAAGACC
* * * *
23566 AAAACTTGTTTTCGAAATGAGAAAAAAAAAACTATTTAGACCAAATTATGCGATTTCCCGTGCAT
255 AAAACTTGTTTACAAAAT--G-----AAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * *
23631 GTAATATTCGAAAAATTGCTAGAAGGAATTGATCGTCTTGAATACTTTAAGGAATCAAAGTTATA
313 GGAATGTTC-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATA
* * * * *
23696 AAA-AACTAGTCAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAAACAAGA-AGG
377 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA-G
* * * * *
23749 AAACAATTCACACTTAAA-ATAGTTTTTAATTCAAAGACCAGAACTTGTTTACAACATGACAAAC
1 AAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAAC
* * * *
23813 TATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGAA
65 TATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG-A
* * * * * *
23878 TCATCTTGAATACTTTAAGGAACTGAAGATATAAAAGAACTCGTCAAAGTTTGACTAGTTTGGAA
129 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
* * * * * *
23943 GTTCGTCCAAGAAACAAGAGGGAAACAATTCTCACGGAAATTAGTTTTTAAATCAAAGACTAGAA
194 GTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * *
24008 GTTGTTTACAACATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGA
259 CTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCA
* * *
24073 AAAATTGCTCGATGGAATGGATCGTCTTGAATACATTAAGGAATCAAAGTTATAAAAGAACTCGT
323 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGT
* * ***
24138 AAAAGTTTAGACATGTTCGAAAGTTCGTTGGAGAACCAAGAGAG
388 AAAAGTTT-GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* * * * * * * *
24182 AAATAATTTTCATGTAAATGAGTTTTTAATTCACAAGA--AAAACTTGTTGAAAAAATTACAAAC
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCA-AAGACCAAAACTTGTTTACAAAATGAAAAAC
* * * *
24245 TATTTAAACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGAAAAACTGCTAGAAGGAGTTG
65 TATTTAGACCAAATGATGCGATTTC-CAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGA-ATG
* * * * * *
24309 ATCGTCTTGAATACTTTATGGAACCGAAGATATAAAAGAACCCGTAAAAGTTTGACATGTTTGAA
128 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * *
24374 AGTTCGTCCAGGAACCAAGAGATAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
193 AGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * *
24439 ACTTG-TTATAAATTG-AAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTG
258 ACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTC
* * * * * *
24502 AAAAATTACTCGAAGAAACGAATAGTCTTGAATACTTTAAGGAATCGAAGTTATAATAGAACTCG
322 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
* * * *
24567 TCAAAGTTTGTCCAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
387 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* * * * *
24611 AAACAATTCTCACATAAATAAGTTTCTAATCCAAAGACCAAAACTTGTTTTCAAAATGAAAAATT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* ** * * * *
24676 ATTTAGAGCAAATGATGCGATTTCTTGAGCTTGGAATATTCGAAAAATTGCTTGAAGCAATGAAT
66 ATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG-AT
* ** * *
24741 CATCTTGAATACTTTAAGGAATTGAAGATATAAAAGAACACGTAAAAATTGTTT-ACAAAATGAA
130 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAAA--GTTTGAC--AA-G--
* * * *** ** * *
24805 AAACTATTTAGACTGAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAA-ACTGT-T-A-GAA
187 -------TT---CGGAA-G-TTCG---T-CCAAG-AAACAA-G-AGAGAAACAAT-TCTCACGTA
* * * * * ** * ** ** * * *
24866 GGAATGGACTATTTTGATTACTTTAAGGAACTGAAGTTGTAAAACAACTTG-TAAA--AGTTCGA
232 --AAT--A--AGTTT--TTAATTCAAAGACCAAAACTTGT-TTACAAAATGAAAAACTATTTAGA
* * * *
24928 -C-AA-G-TTCAGAAGTTCGTCCAAGAACCAAGAGAAAAGTAGTTCTCACGTAAATAAGTT-CTT
288 CCAAATGATGC-G-A-TT--TCC-CG-AGCATG-G--AA-T-G-T-T--C--AAA-AA-TTGC--
* * ** ** * * ** ***
24988 AATTCAAAGACCAAAACTTGTTTACAACATGAAAAAATA-TTTAGACCGAAT-GAAGCGATTTCC
331 ---TCGAAG----GAA--TGGAT-CGTCTTG----AATACTTTA-A-GGAATCGAAGTTA-TAAA
* * * * * * *
25051 CGAGCAT-G-GAATGTTTGAAAAATTACTGGAAGGATTGGGTCATCATTAATACTGTAAGTAACC
379 AGAAC-TCGTAAAAGTTTGACAAGTT-C-GGAA-G--T---TCGTC-------C---AAG-AACC
*
25114 TAAGTTATA-
424 -AAG--AGAG
* * * * * ** ** * * **
25123 AAAGAACTCGTAAAGGTTTGAGAAATTCAGAATTT-CGTCCAAGAACCAAGAGAGAAATAATTCT
1 AAACAATTC-T-CACG--T---AAA-TAAGTTTTTAATTCAAAG-ACC---A-A-AACTTGTT-T
* * * ** * * * * *
25187 -C-ACAT-AAATAAGTTTTTA-ATTCACAGAAAAAACT-TG-TTTACA-A-AATGAAAAACTATT
51 ACAAAATGAAA-AACTATTTAGA--C-C--AAATGA-TGCGATTTCCAGAGCATG--GAA-T-GT
* * * * * *
25244 TAGACCGAATGATGCGATTTCCCGAGCATGGAATG-T--TC-GGAAAACTGCTAGAAGGAATGGA
105 T----CGAA--A---AATTGCTCGA--A-GGAATGATCGTCTTGAATACT--T-TAAGG-A---A
* * *
25305 CCGTCTTGAATACTTTATGGAACCA-AAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGGA
151 -C--C--G-A-A-GTTAT--AA-AAGAA-CT---------C--GTAAAAGTTTGACAAGTTCGGA
*
25369 AGTTCGTCCAAGAACCAAGAGA-AAAGCAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
193 AGTTCGTCCAAGAAACAAGAGAGAAA-CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * *
25433 AACTTGTTTACAAAATGAAAAAAATGTTTAGACCGAATGAAGCGATTTCCTGA-CGATGGAATGT
257 AACTTGTTTACAAAATG-AAAAACTATTTAGACCAAATGATGCGATTTCCCGAGC-ATGGAATGT
* * * * * *
25497 TCGAAAAACTGCTAGAAGGATTGGATTGTCTTTAATACTGTAAGGAATCGAAGTTATAAAAGAAC
320 TC-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAAC
* * * * *
25562 TTGTAAAAGTTTGAGAAGTTCGAAAGTTCATCCAATAACCAAGAGAG
384 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
** * * *
25609 AAACAGGTCTCACGTAAATAAGTTTTTAGTTCAAAGACCAAAACTTGTTTACAAAAGGACAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * * * * *
25674 ATTTAGACAAAATGATGTGATTTCTC-GATCAAGGAATGTTCGAAAAATTTCTCGGAGGAATGGA
66 ATTTAGACCAAATGATGCGATTTC-CAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT-GA
* * * * * *
25738 TCGTCTTGAATAGTTTGAGGAATCGAAGTTATAAAAGAACTCGTCATAGTTTGACTAA-TTTGGA
129 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC-AAGTTCGGA
* * * * *
25802 AGCTCATCCAAGAAGCAAGAGGGAAACAATTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAA
193 AGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * *
25867 ACTTGTTTATAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGACCATGGAATGTTCA
258 ACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA
* * *
25932 GAAAATTGCTTGAAGGATTGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCG
323 -AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
* * * *
25997 TCAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAAACAAGAGAG
387 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* * * * * *
26041 ACACAATTCCCATGTAAATTAGTTTTTAATTGAAAGACCAAAACTTGTTTAGAAAATGAAAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
* * ** * * * * ** *
26106 ATTTACACCGAATGATATGATTTTCAGAGAATGGATTGTTCGAAAAACTAATAGAAGGAATGGAT
66 ATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT-GAT
* * * * * **
26171 CATCTTGAATACTTTAATGAACCGAAGATGTAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAG
130 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* * * * * * *
26236 TTCGTCCATGAATCAAGAGAGAAACAATTCCCGCATAAATAAATTTTTAATTAAAAGACCAAAAC
195 TTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC
* * * * *
26301 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATGAAATATTCGTA
260 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AA
* * * * * * *
26366 AATTTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTC
324 AAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTA
* * * * *
26431 AACGTTTGACCAA-TTCAGAAGTTCATCCAAGAAACAAGAGGG
389 AAAGTTTGA-CAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
*
26473 AAACAATTCTCACGTAAACT-AGTTTTTAATTCGAAGACCAAAACTTGTTTACAAAAT-AACAAA
1 AAACAATTCTCACGTAAA-TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAA-AAA
* * * * * * * *
26536 CTATTTAGACCAAATTATGCGGTTTCCTGAGCATGGATTGTTTGGAAAATTTCTCAAAGGAATGG
64 CTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT-G
* * * * *
26601 ATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTAGATACGTTCGA
128 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTT-GACAAGTTCGG
* * * * **
26666 AAGTT-GATCCATGAACCAGGAGAGAAACAATTTTCACGTAAATAAGTTTTTAATTCAAAGAAAA
192 AAGTTCG-TCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * ** *
26730 AAACTTATATACAAAATTACAAACTATTTAGACCAAATGATGTAATTTCCTGAGCATG
256 AAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
26788 AAATTGATGC
Statistics
Matches: 6228, Mismatches: 1188, Indels: 735
0.76 0.15 0.09
Matches are distributed among these distances:
418 1 0.00
419 26 0.00
420 276 0.04
421 3 0.00
422 3 0.00
427 29 0.00
428 8 0.00
429 110 0.02
430 972 0.16
431 540 0.09
432 2073 0.33
433 645 0.10
434 256 0.04
435 325 0.05
436 73 0.01
437 6 0.00
438 256 0.04
439 50 0.01
444 4 0.00
445 4 0.00
447 6 0.00
448 2 0.00
449 4 0.00
450 1 0.00
452 2 0.00
453 5 0.00
454 4 0.00
455 8 0.00
456 5 0.00
457 8 0.00
458 5 0.00
459 11 0.00
460 11 0.00
461 22 0.00
462 8 0.00
463 11 0.00
464 4 0.00
465 5 0.00
467 2 0.00
468 1 0.00
469 6 0.00
470 8 0.00
471 5 0.00
472 3 0.00
473 9 0.00
474 13 0.00
475 7 0.00
476 2 0.00
478 9 0.00
479 8 0.00
480 5 0.00
482 1 0.00
484 5 0.00
485 3 0.00
486 8 0.00
487 6 0.00
488 4 0.00
489 2 0.00
490 4 0.00
491 20 0.00
492 11 0.00
493 4 0.00
494 1 0.00
496 1 0.00
499 9 0.00
502 1 0.00
504 1 0.00
505 4 0.00
506 11 0.00
507 22 0.00
508 3 0.00
509 3 0.00
510 4 0.00
511 5 0.00
512 10 0.00
513 3 0.00
514 2 0.00
516 1 0.00
518 4 0.00
519 7 0.00
520 8 0.00
522 1 0.00
523 8 0.00
524 14 0.00
525 9 0.00
526 3 0.00
527 6 0.00
528 7 0.00
529 4 0.00
530 1 0.00
531 2 0.00
533 12 0.00
534 19 0.00
535 5 0.00
536 13 0.00
537 6 0.00
538 14 0.00
539 10 0.00
540 11 0.00
541 10 0.00
542 6 0.00
543 2 0.00
546 3 0.00
547 1 0.00
548 5 0.00
549 1 0.00
550 1 0.00
551 5 0.00
553 4 0.00
554 1 0.00
560 1 0.00
561 2 0.00
562 4 0.00
563 3 0.00
564 4 0.00
565 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (430 bp):
AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACT
ATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGATC
GTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
TCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACT
TGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAA
ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAA
AGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
Found at i:24909 original size:134 final size:134
Alignment explanation
Indices: 24650--24901 Score: 314
Period size: 134 Copynumber: 1.9 Consensus size: 134
24640 TCCAAAGACC
* * * ** *
24650 AAAACTTGTTTTCAAAATGAAAAATTATTTAGAGCAAATGATGCGATTTCTTGAGCTTGGAATAT
1 AAAAATTGTTTACAAAATGAAAAACTATTTAGAGCAAATGATGCGATTTCCCGAGCATGGAATAT
* *
24715 TCGAAAAATTGCTTGAAGCAATGAATCATCTTGAATACTTTAAGGAATTGAAGATATAAAAGAAC
66 TCGAAAAACTGCTTGAAGCAATGAATCATCTTGAATACTTTAAGGAACTGAAGATATAAAAGAAC
24780 ACGT
131 ACGT
* *
24784 AAAAATTGTTTACAAAATGAAAAACTATTTAGA-CTGAATGATGCGATTTCCCGAGCATGGAATG
1 AAAAATTGTTTACAAAATGAAAAACTATTTAGAGC-AAATGATGCGATTTCCCGAGCATGGAATA
* * * *
24848 TTC-AGAAAACTG-TTAGAAGGAATGGA-CTATTTTGATTACTTTAAGGAACTGAAG
65 TTCGA-AAAACTGCTT-GAAGCAATGAATC-ATCTTGAATACTTTAAGGAACTGAAG
24902 TTGTAAAACA
Statistics
Matches: 100, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
133 5 0.05
134 95 0.95
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.31
Consensus pattern (134 bp):
AAAAATTGTTTACAAAATGAAAAACTATTTAGAGCAAATGATGCGATTTCCCGAGCATGGAATAT
TCGAAAAACTGCTTGAAGCAATGAATCATCTTGAATACTTTAAGGAACTGAAGATATAAAAGAAC
ACGT
Found at i:25125 original size:350 final size:349
Alignment explanation
Indices: 24454--25136 Score: 824
Period size: 350 Copynumber: 2.0 Consensus size: 349
24444 TTATAAATTG
* *
24454 AAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTACTCGAAGAA
1 AAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTAGAAAAATTA-TAGAAGAA
* * * * * *
24519 ACGAATAGTCTTGAATACTTTAAGGAATCGAAGTTATAATAGAACTCGTCAAAGTTTGTCCAGTT
65 ACGAATAGTCTTGAATACTTTAAGGAATCGAAGTTATAAAACAACTCGTAAAAGTTCGACAAGTT
24584 CGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTCTAATCCAAAGAC
130 CGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTCTAATCCAAAGAC
* * * * ** *
24649 CAAAACTTGTTTTCAAAATGAAAAATTATTTAGAGCAAATGATGCGATTTCTTGAGCTTGGAATA
195 CAAAACTTGTTTACAAAATGAAAAAATATTTAGACCAAATGAAGCGATTTCCCGAGCATGGAATA
* * * *
24714 TTCGAAAAATTGCTTGAAGCAATGAATCATCTTGAATACTTTAAGGAATTGAAGATATAAAAGAA
260 TTCGAAAAATTACTGGAAGCAATGAATCATCTTGAATACTGTAAGGAACTGAAGATATAAAAGAA
24779 CACGTAAAAATTGTTTACAAAATGA
325 CACGTAAAAATTGTTTACAAAATGA
** *
24804 AAAACTATTTAGACTGAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAACTGT-TAGAAGG
1 AAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT-AGAAAAAT-TATAGAA-G
** * * * * *
24868 AATGGACTA-TTTTGATTACTTTAAGGAA-CTGAAGTTGTAAAACAACTTGTAAAAGTTCGACAA
63 AAACGAATAGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAACAACTCGTAAAAGTTCGACAA
* * * *
24931 GTTC-AGAAGTTCGTCCAAGAACCAAGAGA-AAAGTAGTTCTCACGTAAATAAG-TTCTTAATTC
127 GTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTCACATAAATAAGTTTC-TAATCC
* *
24993 AAAGACCAAAACTTGTTTACAACATGAAAAAATATTTAGACCGAATGAAGCGATTTCCCGAGCAT
189 AAAGACCAAAACTTGTTTACAAAATGAAAAAATATTTAGACCAAATGAAGCGATTTCCCGAGCAT
* * * * ** * *
25058 GGAATGTTTGAAAAATTACTGGAAGGATTGGGTCATCATT-AATACTGTAAGTAACCT-AAGTTA
254 GGAATATTCGAAAAATTACTGGAAGCAATGAATCATC-TTGAATACTGTAAGGAA-CTGAAGATA
*
25121 TAAAAGAACTCGTAAA
317 TAAAAGAACACGTAAA
25137 GGTTTGAGAA
Statistics
Matches: 280, Mismatches: 44, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
349 8 0.03
350 255 0.91
351 16 0.06
352 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (349 bp):
AAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTAGAAAAATTATAGAAGAAA
CGAATAGTCTTGAATACTTTAAGGAATCGAAGTTATAAAACAACTCGTAAAAGTTCGACAAGTTC
GAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTCTAATCCAAAGACC
AAAACTTGTTTACAAAATGAAAAAATATTTAGACCAAATGAAGCGATTTCCCGAGCATGGAATAT
TCGAAAAATTACTGGAAGCAATGAATCATCTTGAATACTGTAAGGAACTGAAGATATAAAAGAAC
ACGTAAAAATTGTTTACAAAATGA
Found at i:25163 original size:216 final size:216
Alignment explanation
Indices: 24784--26787 Score: 2235
Period size: 216 Copynumber: 9.3 Consensus size: 216
24774 AAGAACACGT
* **
24784 AAAAATTGTTTACAAAATGAAAAACTATTTAGACTGAATGATGCGATTTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * ** * *
24849 TC-AGAAAACTGTTAGAAGGAATGGA-CTATTTTGATTACTTTAAGGAACTGAAGTTGTAAAACA
66 TCGA-AAAATTGCTAGAAGGAATGGATC-GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * * *
24912 ACTTGTAAAAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGA-AAAGTAGTTCTCACGT
129 ACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTCACGT
*
24976 AAATAAGTTCTTAATTCAAAGACC
193 AAATAAGTTTTTAATTCAAAGACC
* * * *
25000 AAAACTTGTTTACAACATGAAAAAATATTTAGACCGAATGAAGCGATTTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * * * *
25065 TTGAAAAATTACTGGAAGGATTGGGTCATCATT-AATACTGTAAGTAACCTAAGTTATAAAAGAA
66 TCGAAAAATTGCTAGAAGGAATGGATCGTC-TTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * * * * *
25129 CTCGTAAAGGTTTGAGAAATTCAGAATTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACATAA
130 CTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
* *
25194 ATAAGTTTTTAATTCACAGA-A
195 ATAAGTTTTTAATTCAAAGACC
*
25215 AAAACTTGTTTACAAAATGAAAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * *
25280 TCGGAAAACTGCTAGAAGGAATGGACCGTCTTGAATACTTTATGGAACCAAAGTTATAAAAGAAC
66 TCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* *
25345 TTGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA-AAAGCAATTCTCACGTAA
131 TCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTCACGTAA
25409 ATAAGTTTTTAATTCAAAGACC
195 ATAAGTTTTTAATTCAAAGACC
* * * * *
25431 AAAACTTGTTTACAAAATGAAAAAAATGTTTAGACCGAATGAAGCGATTTCCTGA-CGATGGAAT
1 AAAACTTGTTTACAAAATG-AAAAACTATTTAGACCAAATGATGCGATTTCCCGAGC-ATGGAAT
* * * * * * *
25495 GTTCGAAAAACTGCTAGAAGGATTGGATTGTCTTTAATACTGTAAGGAATCGAAGTTATAAAAGA
64 GTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * * * **
25560 ACTTGTAAAAGTTTGAGAAGTTC-GAAAGTTCATCCAATAACCAAGAGAGAAACAGGTCTCACGT
129 ACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
*
25624 AAATAAGTTTTTAGTTCAAAGACC
193 AAATAAGTTTTTAATTCAAAGACC
* * * * * * *
25648 AAAACTTGTTTACAAAAGGACAAACTATTTAGACAAAATGATGTGATTTCTCGATCAAGGAATGT
1 AAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * *
25713 TCGAAAAATTTCTCGGAGGAATGGATCGTCTTGAATAGTTTGAGGAATCGAAGTTATAAAAGAAC
66 TCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * ** * * * *
25778 TCGTCATAGTTTGACTAA-TTTGGAAGCTCATCCAAGAAGCAAGAGGGAAACAATTCTCACGTAA
131 TCGTAAAAGTTTGAC-AAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
*
25842 ATTAGTTTTTAATTCAAAGACC
195 ATAAGTTTTTAATTCAAAGACC
* * * *
25864 AAAACTTGTTTATAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGACCATGGAATGT
1 AAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * *
25929 TC-AGAAAATTGCTTGAAGGATTGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAA
66 TCGA-AAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * * * * *
25993 CTCGTCAAAGTTTGACAAGTT-TGAAAGTTCGTCCAAGAAACAAGAGAGACACAATTCCCATGTA
130 CTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* *
26057 AATTAGTTTTTAATTGAAAGACC
194 AATAAGTTTTTAATTCAAAGACC
* * * ** * * * *
26080 AAAACTTGTTTAGAAAATGAAAAACTATTTACACCGAATGATATGATTTTCAGAGAATGGATTGT
1 AAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* ** * * * * *
26145 TCGAAAAACTAATAGAAGGAATGGATCATCTTGAATACTTTAATGAACCGAAGATGTAAAAGAAC
66 TCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * * * * *
26210 TCATAAAAGTTTGACAAGTTCAAAAGTTCGTCCATGAATCAAGAGAGAAACAATTCCCGCATAAA
131 TCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* *
26275 TAAATTTTTAATTAAAAGACC
196 TAAGTTTTTAATTCAAAGACC
* * * *
26296 AAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATGAAATAT
1 AAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * *
26361 TCGTAAATTTGCTCA-AAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTGTAAAAGAA
66 TCGAAAAATTGCT-AGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * * * *
26425 CTCGTCAACGTTTGACCAA-TTCAGAAGTTCATCCAAGAAACAAGAGGGAAACAATTCTCACGTA
130 CTCGTAAAAGTTTGA-CAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
*
26489 AACT-AGTTTTTAATTCGAAGACC
194 AA-TAAGTTTTTAATTCAAAGACC
* * * *
26512 AAAACTTGTTTACAAAAT-AACAAACTATTTAGACCAAATTATGCGGTTTCCTGAGCATGGATTG
1 AAAACTTGTTTACAAAATGAA-AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * *
26576 TTTGGAAAATTTCTCA-AAGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGA
65 TTCGAAAAATTGCT-AGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * * * *
26640 ACTCGTAAAAGTTTAGATACGTTC-GAAAGTT-GATCCATGAACCAGGAGAGAAACAATTTTCAC
129 ACTCGTAAAAGTTT-GACAAGTTCAG-AAGTTCG-TCCAAGAACCAAGAGAGAAACAATTCTCAC
**
26703 GTAAATAAGTTTTTAATTCAAAGAAA
191 GTAAATAAGTTTTTAATTCAAAGACC
* * * * ** *
26729 AAAACTTATATACAAAATTACAAACTATTTAGACCAAATGATGTAATTTCCTGAGCATG
1 AAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
26788 AAATTGATGC
Statistics
Matches: 1522, Mismatches: 237, Indels: 57
0.84 0.13 0.03
Matches are distributed among these distances:
214 5 0.00
215 188 0.12
216 1014 0.67
217 311 0.20
218 4 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (216 bp):
AAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
TCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
TCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
TAAGTTTTTAATTCAAAGACC
Found at i:26118 original size:648 final size:646
Alignment explanation
Indices: 24784--26769 Score: 2470
Period size: 648 Copynumber: 3.1 Consensus size: 646
24774 AAGAACACGT
* * * * *
24784 AAAAATTGTTTACAAAATGAAAAACTATTTAGACTGAATGATGCGATTTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGAAAAACTATTTAGACCGAATGAAGCGATTTCCAGAGAATGGAATGT
* * * *
24849 TC-AGAAAACTGTTAGAAGGAATGGACTAT-TTTGATTACTTTAAGGAACTGAAGTTGTAAAACA
66 TCGA-AAAACTGATAGAAGGAATGGATTATCTTT-AATACTTTAAGGAAC-GAAGTTGTAAAAGA
* * *
24912 ACTTGTAAAAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGA-AAAGTAGTTCTCACGT
128 ACTTGTAAAAGTTTGACAAGTTCA-AAGTTCGTCCAATAACCAAGAGAGAAA-CAGTTCTCACGT
* * * *
24976 AAATAAGTTCTTAATTCAAAGACCAAAACTTGTTTACAACATGAAAAAATATTTAGACCGAATGA
191 AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGA
* * * * * *
25041 AGCGATTTCCCGAGCATGGAATGTTTGAAAAATTACT-GGAAGGATTGGGTCATCATT-AATACT
256 TGCGATTTCTCGAGCATGGAATGTTCGAAAAATTTCTCGG-AGGAATGGATCATC-TTGAATACT
* * * * * * * * *
25104 GTAAGTAACCTAAGTTATAAAAGAACTCGTAAAGGTTTGAGAAATTCAGAATTTCGTCCAAGAAC
319 TTAAGGAACCAAAGTTATAAAAGAACTCGTCAACGTTTGACAAATTCAGAAGTTCATCCAAGAAA
* * * * * *
25169 CAAGAGAGAAATAATTCTCACATAAATAAGTTTTTAATTCACAGA-AAAAACTTGTTTACAAAAT
384 CAAGAGGGAAACAATTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * *
25233 GAAAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAACTGCTAGAAG
449 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTAGAAG
* * * *
25298 GAATGGACCGTCTTGAATACTTTATGGAACCAAAGTTATAAAAGAACTTGTAAAAGTTTGACAAG
514 GAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
*
25363 TTCGGAAGTTCGTCCAAGAACCAAGAGA-AAAGCAATTCTCACGTAAATAAGTTTTTAATTCAAA
579 TTCGAAAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTCACGTAAATAAGTTTTTAATTCAAA
25427 GACC
643 GACC
* * *
25431 AAAACTTGTTTACAAAATGAAAAAAATGTTTAGACCGAATGAAGCGATTTCCTGACG-ATGGAAT
1 AAAACTTGTTTACAAAATG-AAAAACTATTTAGACCGAATGAAGCGATTTCCAGA-GAATGGAAT
* * * * *
25495 GTTCGAAAAACTGCTAGAAGGATTGGATTGTCTTTAATACTGTAAGGAATCGAAGTTATAAAAGA
64 GTTCGAAAAACTGATAGAAGGAATGGATTATCTTTAATACTTTAAGGAA-CGAAGTTGTAAAAGA
* * *
25560 ACTTGTAAAAGTTTGAGAAGTTCGAAAGTTCATCCAATAACCAAGAGAGAAACAGGTCTCACGTA
128 ACTTGTAAAAGTTTGACAAGTTC-AAAGTTCGTCCAATAACCAAGAGAGAAACAGTTCTCACGTA
* * * *
25625 AATAAGTTTTTAGTTCAAAGACCAAAACTTGTTTACAAAAGGACAAACTATTTAGACAAAATGAT
192 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGAT
* * * * * *
25690 GTGATTTCTCGATCAAGGAATGTTCGAAAAATTTCTCGGAGGAATGGATCGTCTTGAATAGTTTG
257 GCGATTTCTCGAGCATGGAATGTTCGAAAAATTTCTCGGAGGAATGGATCATCTTGAATACTTTA
* * * ** * *
25755 AGGAATCGAAGTTATAAAAGAACTCGTCATA-GTTTGACTAATTTGGAAGCTCATCCAAGAAGCA
322 AGGAACCAAAGTTATAAAAGAACTCGTCA-ACGTTTGACAAATTCAGAAGTTCATCCAAGAAACA
*
25819 AGAGGGAAACAATTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTGTTTATAAAATGA
386 AGAGGGAAACAATTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGA
* * * *
25884 CAAACTATTTAGACCAAATGATGTGATTTCCCGACCATGGAATGTTCAGAAAATTGCTTGAAGGA
451 CAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGA
* *
25949 TTGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTCAAAGTTTGACAAGTT
516 ATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* * * * * * *
26014 TGAAAGTTCGTCCAAGAAACAAGAGAGACACAATTCCCATGTAAATTAGTTTTTAATTGAAAGAC
581 CGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
26079 C
646 C
* * * * *
26080 AAAACTTGTTTAGAAAATGAAAAACTATTTACACCGAATGATA-TGATTTTCAGAGAATGGATTG
1 AAAACTTGTTTACAAAATGAAAAACTATTTAGACCGAATGA-AGCGATTTCCAGAGAATGGAATG
* * * * *
26144 TTCGAAAAACTAATAGAAGGAATGGATCATCTTGAATACTTTAATGAACCGAAGATGTAAAAGAA
65 TTCGAAAAACTGATAGAAGGAATGGATTATCTTTAATACTTTAAGGAA-CGAAGTTGTAAAAGAA
** * * * * *
26209 CTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCC-ATGAATCAAGAGAGAAACAATTCCCGCATA
129 CTTGTAAAAGTTTGACAAGTTC-AAAGTTCGTCCAAT-AACCAAGAGAGAAACAGTTCTCACGTA
* *
26273 AATAAATTTTTAATTAAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGAT
192 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGAT
* * * * **
26338 GCAATTTCTCGAGCATGAAATATTCG-TAAATTTGCTCAAAGGAATGGATCATCTTGAATACTTT
257 GCGATTTCTCGAGCATGGAATGTTCGAAAAATTT-CTCGGAGGAATGGATCATCTTGAATACTTT
* *
26402 AAGGAACCAAAGTTGTAAAAGAACTCGTCAACGTTTGACCAATTCAGAAGTTCATCCAAGAAACA
321 AAGGAACCAAAGTTATAAAAGAACTCGTCAACGTTTGACAAATTCAGAAGTTCATCCAAGAAACA
* * *
26467 AGAGGGAAACAATTCTCACGTAAACTAGTTTTTAATTCGAAGACCAAAACTTGTTTACAAAATAA
386 AGAGGGAAACAATTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGA
* * * * * *
26532 CAAACTATTTAGACCAAATTATGCGGTTTCCTGAGCATGGATTGTTTGGAAAATTTCTCA-AAGG
451 CAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCT-AGAAGG
* *
26596 AATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTAGATACG
515 AATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTT-GACAAG
* * *
26661 TTCGAAAGTT-GATCCATGAACCAGGAGAGAAACAATTTTCACGTAAATAAGTTTTTAATTCAAA
579 TTCGAAAGTTCG-TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
**
26725 GAAA
643 GACC
* * * * *
26729 AAAACTTATATACAAAATTACAAACTATTTAGACCAAATGA
1 AAAACTTGTTTACAAAATGAAAAACTATTTAGACCGAATGA
26770 TGTAATTTCC
Statistics
Matches: 1145, Mismatches: 174, Indels: 38
0.84 0.13 0.03
Matches are distributed among these distances:
647 30 0.03
648 798 0.70
649 315 0.28
650 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (646 bp):
AAAACTTGTTTACAAAATGAAAAACTATTTAGACCGAATGAAGCGATTTCCAGAGAATGGAATGT
TCGAAAAACTGATAGAAGGAATGGATTATCTTTAATACTTTAAGGAACGAAGTTGTAAAAGAACT
TGTAAAAGTTTGACAAGTTCAAAGTTCGTCCAATAACCAAGAGAGAAACAGTTCTCACGTAAATA
AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
TTTCTCGAGCATGGAATGTTCGAAAAATTTCTCGGAGGAATGGATCATCTTGAATACTTTAAGGA
ACCAAAGTTATAAAAGAACTCGTCAACGTTTGACAAATTCAGAAGTTCATCCAAGAAACAAGAGG
GAAACAATTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTAGAAGGAATGGA
TCGTCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
Found at i:27141 original size:18 final size:17
Alignment explanation
Indices: 27090--27142 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
27080 AGAAAACATT
*
27090 TCATGCATTTCATACAAC
1 TCATGCA-TTCATGCAAC
* *
27108 TCGTGCACTTCTTGCAAC
1 TCATGCA-TTCATGCAAC
27126 TCATGCATTCCATGCAA
1 TCATGCATT-CATGCAA
27143 TGTGATGCAC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
17 2 0.07
18 26 0.93
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.32
Consensus pattern (17 bp):
TCATGCATTCATGCAAC
Found at i:31114 original size:10 final size:10
Alignment explanation
Indices: 31099--31151 Score: 65
Period size: 10 Copynumber: 5.5 Consensus size: 10
31089 TATTGTTTGG
31099 AAGAAAAGGA
1 AAGAAAAGGA
31109 AAGAAAA-GA
1 AAGAAAAGGA
31118 AA-AAAAGGA
1 AAGAAAAGGA
*
31127 AAGGAAAGGA
1 AAGAAAAGGA
* *
31137 AAGGAAAGAA
1 AAGAAAAGGA
31147 AAGAA
1 AAGAA
31152 TTGAAAAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
8 4 0.11
9 8 0.21
10 26 0.68
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (10 bp):
AAGAAAAGGA
Done.