Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01002804.1 Kokia drynarioides strain JFW-HI SEQ_115149, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8859
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Found at i:386 original size:216 final size:215
Alignment explanation
Indices: 5--8850 Score: 10048
Period size: 216 Copynumber: 41.2 Consensus size: 215
1 TTTA
* *
5 CAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATATTCGAAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * * *
70 TCCAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGTTT
* * * * * * *
135 GACAGGTTCGGAACTTTGTCCAAGAACAGAGAGAGAAACAAGTCTCACGTAAATAAGTTTCTAAT
130 GACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* *
200 TCAAAGACGAAAACTTGTTTA
195 TCAAAGACCAAAACTTGTTTG
* * * * *
221 CGAAATGACAAACTATTTAGTCCAAATGATGCAATTTTCCAAGCATGGAATGTTCGAAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * * *
286 TCGAAGGAATGGATCTTGTTGAAAACTTTAGGGAACTGAAGTTAAAAAACAACTCATAAAAGTTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACT-ATAAAAGTTT
* *
351 CACAATTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
130 GACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
*
416 TCAAAGACCAATACTTGTTTG
195 TCAAAGACCAAAACTTGTTTG
* * * * * *
437 CAAAATGACAAACTATTTATG-CCAAATGATGCGATTTGCTGAGCTTGGAATATTTGAAAATTTG
1 CAAAATGACAAACTATTTA-GACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTG
* * * * * * * * *
501 CTCGAAGGAACGGATCATCTTGAATAATTTATGGATCCAAAGTTATAAATGAACTAGTAAAATTT
65 CTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGTT
*
566 TGACAAGTTCAAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
129 TGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* *
631 TTCAACGACAAAAACTTGTTTG
194 TTCAAAGACCAAAACTTGTTTG
* * * * * *
653 CAAAACGACAAACTATTTAGACCAAATGATGTGATTTGCCGAGCATCGAATATTC-AGAAAATTA
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTG
* * * * ** *
717 CT-GAAATGAATGGATCGTCTTGTATACTTTAAGGATCAAAAGTTATAAAAGAACTAGTAAAAGT
65 CTCG-AAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGT
* * * * *
781 TTGACAGGTTC-AGAACTTTGTCCAAGAACAAAGACAGAAACAATTCTCACGTAAATAAGTTTCT
128 TTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
845 AATTCAAAGACAAAAACTTGTTTC
192 AATTCAAAGACCAAAACTTGTTTG
* * * * *
869 CGAAATGACAAACTATTTAGACCAAAAGATGCAATTTTCCGAGCATGGAATGTTCAAAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * * * * *
934 TCGAAAGAATAGATCGTT-TTGAATACTTTAAAGATCCAAAGTTATAAAAGAACTAGTAAAACTT
66 TCGAAGGAATGGATC-TTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGTT
* * * * *
998 TGACAGGTTTGGAACTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
129 TGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* *
1063 TTCAAAGACCAAAACTTCTTTA
194 TTCAAAGACCAAAACTTGTTTG
* * *
1085 TAAAATGACAAACTATTTAGACCAAATGATGCGAATTCCCGAGCATGGAATGTTCAAAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* ** *
1150 TCGAAGGAAT-GATCTTGTTGAATACTTT-AGCGAACTAAAGTTAAAAAATAACTCATAAAAGTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAG-GAACCGAAGTTAAAAAAGAACT-ATAAAAG-T
* *
1213 TTG-CAATTTCAAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
128 TTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
1277 ATTCAAAGACCAAAACTTGTTTG
193 ATTCAAAGACCAAAACTTGTTTG
* * * *
1300 CAAAATGACAAACTATTTAGGCCAAATGGTGCGATTTCTCGAGCATGGGATGTTCGAAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* ** * *
1365 TCGAAGGAAT-GATCTTGTTGAATACTTT-AGCGAACTAAAGTTCAAAAATAACTCATAAAAGTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAG-GAACCGAAGTTAAAAAAGAACT-ATAAAAG-T
* * * *
1428 TTG-CAATTTCAAAAGTTCGTCCAAGAAGAAAGAGTGAAACAATTCTCACGTAAATAAGTTTTTA
128 TTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
1492 ATTCAAAGACCAAAACTTGTTTG
193 ATTCAAAGACCAAAACTTGTTTG
1515 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * * **
1580 TCGAAGGAATGAATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAACTAACTCATAAAAGTTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACT-ATAAAAGTTT
* *
1645 TACAATTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
130 GACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
1710 TCAAAGACCAAAACTTGTTTG
195 TCAAAGACCAAAACTTGTTTG
* * * * * *
1731 CAAAATGACAAACTATTTAGGCCAAATGATGAGTTTTGCCGAGCATGGAATATTTGAAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * * * * * *
1796 TCGAAGTAACGGATCGTCTTGAATAATTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAATTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGTTT
* * *
1861 GACAAGTTCGAAAGTTCGTACAA-AGACAAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAA
130 GACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* *
1925 TTCAAAGAGCAAAAGTTGTTTG
194 TTCAAAGACCAAAACTTGTTTG
* * * * * ** * *
1947 CTAAATGACAAACTATTTGGACCAAATGATACGATTTGCCGAGCTTGGAAAATTCGGAAAATTAC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * * * * * *
2012 T-GAAATGAATGGATCGTCTTGAAAACCTTAAGGATCCAAAGTTATAAAAGAACTTGTAAAAGTT
66 TCG-AAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAAC-TATAAAAGTT
2076 TGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
129 TGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
*
2141 TTCAACGACCAAAACTTGTTTG
194 TTCAAAGACCAAAACTTGTTTG
* * * * * *
2163 CAAAACGACAAACTATTTAGACCAAATGATACGATTTGCCGAGCATGGGATATTCGAAAATTTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * ** * *
2228 TCGAAGGAACGGATCGTCTTGAATAATTTAAGGATGCAAAGTTATAAAAGAACTAGTAAAAGTTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGTTT
* * *
2293 AACAAGTTCGAAAGTTCGTACAA-AGACAAAGAAAGAAACAATTCTCACGTAAATAAGTTTTTAA
130 GACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* *
2357 TTCAAAGACCAAAAGTTGTTTT
194 TTCAAAGACCAAAACTTGTTTG
* * * * * *
2379 CAAAATGACAAAGTATTTAGGCCAAACGATGCGATTTCCCGAGCATGAAATATTCAAAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * *** *
2444 TTGAAGGAATGGATCGTCTTGAATACTTTAAGGATTTGAAGTTATGAAAA-AACTAGTAAAAGTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTA-AAAAAGAACTA-TAAAAGTT
* * *
2508 TCACTAA-TTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATATGTTTTTA
129 TGAC-AAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* * *
2572 ATTCAAAGACAAAAACTTGTATA
193 ATTCAAAGACCAAAACTTGTTTG
* * * *
2595 CAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCAAGGATGGAATGTTCGGAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * * * * * *
2660 TCAAAGGACTGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTTGTAACAGTTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAAC-TATAAAAGTTT
* *
2725 GACAAGTTTTG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAATTTTTTAA
130 GACAAG-TTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
*
2789 TTCAACGACCAAAACTTGTTTG
194 TTCAAAGACCAAAACTTGTTTG
* * * * * * ** *
2811 CAAAACGACAAACTATTTAGACCAAATAATGTGATTTGCCAAGCTTGGAAAATTCGAAAAATTAC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * * * * *
2876 T-GAAATGAATGGATCGTCTTAAATACTTTAAGGATCCGAAGTTATAAAAGAACTAGTAATAGGT
66 TCG-AAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGTT
* * *
2940 TGACAAGTTCGGAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAA
129 TGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* *
3005 TTCAAAGACCAAAACTTTTTTA
194 TTCAAAGACCAAAACTTGTTTG
* * * * *
3027 CAGAATGACAAACTATTTAGACCAAGTGATGCGATTTCCCAAGGATGGAATGTTCAAAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* ** * * * * *
3092 TCTAAAAAATGGATCTTGTTGAATACTTTAGGGAA-CTAATGTTAAAAAATAACTCGTAAAAGTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAA-GTTAAAAAAGAACT-ATAAAAGTT
* *
3156 CGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGT-AATAAATTTTTAA
129 TGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
*
3220 TTTAAAGACCAAAACTTGTTTG
194 TTCAAAGACCAAAACTTGTTTG
*
3242 CAAAATGACAAATTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AGAAAATTG
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTG
* * * * * * ** *
3306 CTCGAAAGAATAGATCGTCTTGAATACTGTAAGGATCCAAAGTTGTAAAAGAACTAGTAAGAGTT
65 CTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGTT
* * *
3371 TGACAGGTTCGAAACTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
129 TGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* *
3436 TTCAAAGACCAAAACCTGTTTA
194 TTCAAAGACCAAAACTTGTTTG
* * *
3458 CAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGGATGGAATGTTTGAAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * ** * * *
3523 TCCAAGGAATGGATCTTGTTGAATACTTTAGGGAACTAAAGTTAAAAAATAAATCATAAAATTTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACT-ATAAAAGTTT
* *
3588 GACAATTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATACTCACGTAAATAAGTTTTTAAT
130 GACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
*
3653 TCAAAGACCAAAACTTGTTTT
195 TCAAAGACCAAAACTTGTTTG
* * * * * *
3674 CAAAATGACAAACTATTTAGGCTAAATGATGCGATTTGCCAAGCATGGAATATTC-AAAAATTTA
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-TTG
* * * * ** * *
3738 CTAGAAGGAACGGATCGTCTTGAATAATTTAAGGATTCAAAGTTATAAAAGAACTAGTAAAAGTT
65 CTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGTT
* * *
3803 TGACAAGTTCGAAAGTTCGTACAA-AGACAAAGAAAGAAACAATTCTCATGTAAATAAGTTTTTA
129 TGACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* *
3867 ATTCAAAGACCAAAAGTTTTTTG
193 ATTCAAAGACCAAAACTTGTTTG
* * *
3890 CAAAATGACAAACTATCTAGAACAAATGATGTGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * * *** * ***
3955 TCGAAAGAATGGATCGTCTTGAATAC--TGAGGATCCGAAGTTATCGATGAACTAGTAAAACACT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGTTT
* * *
4018 GACAAGCTCGAATGTTCGTCCAAGAACAAAGAGAGAAACCATTCTCACGTAAATAAGTTTTTAAT
130 GACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * *
4083 TCAAAGATCAAAACTTGTGTA
195 TCAAAGACCAAAACTTGTTTG
* * * *
4104 CAAAATGAC--A-TATTTTGACCAAATGATGCGATTTCTCAAGCATGGAATGTTCGGAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * * * * * * * *
4166 TCTACGGAATGGATTTTGTTGAATGCTTTAGGGAACCAAAGTTAAAAAATAACCTGTTAAAGTTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAA-CTATAAAAGTTT
* * * *
4231 GACCAGTTCGGAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCATGTAAATAA--TTTTAAT
130 GACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* *
4294 TCAAAGAACAAAACTTGTTTA
195 TCAAAGACCAAAACTTGTTTG
* * *
4315 CAAAATGACAAACTTTTTAGACCAATTGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * * * *
4380 TCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACCGAAGTTTAAAAATAACTTGTAAAAGTTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAAC-TATAAAAGTTT
* * * * * * *
4445 GACAGGTTCAAAAGTTCATACAA-AGGCAAAGAGAGAAACAAATCTCATGTAAATAAGTTTTTAA
130 GACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
*
4509 TTTAAAGACCAAAACTTGTTTG
194 TTCAAAGACCAAAACTTGTTTG
* ** *
4531 CAAAATGACAAACTATTCAGGA-CAAATGATGCGATTTTTCGAGCATGGAATGTTCGGAAAATTG
1 CAAAATGACAAACTATTTA-GACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTG
* *** *
4595 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGATTTGAAGTTATAAAAGAACTAGTAAAAGTT
65 CTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGTT
* *
4660 TGACAAGTTCGAAAGTTTGTCCAAGAACAAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAA
129 TGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* *
4725 TTCAAAGACCAAAACTTGTATA
194 TTCAAAGACCAAAACTTGTTTG
* * * * * *
4747 CAAAATGACAAACTATTTAGACCAAATGATACGATTTCCCAAGGATGGAATGTTCGGAACATTGT
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * * * * *
4812 TCAAAGGAATGGATATTGTTGAATACTTTAGGGAATCGAAGTTAAAAAATAACTCATAAATGTTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACT-ATAAAAGTTT
* * *
4877 GACATGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCATGTAAATAAGTTATTAAT
130 GACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
4942 TCAAAGACCGAAAACTT-TTTG
195 TCAAAGACC-AAAACTTGTTTG
* *
4963 CAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTT-TAGAAAATTG
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTG
* * * * * * * *
5027 CTCGAAAGAATAGATCGTCTTGAATACTTTCAGGATCCAAAGTTATAAAAGAACTTGTAAAAGTT
65 CTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAAC-TATAAAAGTT
* * * * * * *
5092 TTACAAGTTCGAAATTTCGTCCAACAATAAAGAGAGAAACAATTCTCGCGTAAGTAAGTTTCTAA
129 TGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* *
5157 TTCAAAGATCAAAACTTGTTTA
194 TTCAAAGACCAAAACTTGTTTG
* * * * *
5179 CAAAACGACATATTATTTAGTCCAAATGATGCGATTTCCTC-ATCATGGAATGTTC-AGAAAATT
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-CGAGCATGGAATGTTCGA-AAAATT
* * * *
5242 GCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACC-AA--T---------C-GTAAAAGTT
64 GCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTATAAAAGTT
* * *
5294 TGACAAGTTCGAAAGTTCGTACAA-AGACAAAGAGAGAAACAATTCTCATGTAAATAAGTTCTTA
129 TGACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
5358 ATTCAAAGACCAAAACTTGTTTG
193 ATTCAAAGACCAAAACTTGTTTG
* * *
5381 CAAAATGACAAACTATTTAGGCCAAATGATGCGATTTGCCGAGCATGGAATATTC-AGAAAATTG
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTG
* * *
5445 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTT
65 CTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGTT
* * * *
5510 TGACAAGCTCGGAAGTTCGTCCAAGAACAAAGATAGAAACAATTCTCACGTAAATAAGTTTTAAA
129 TGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* *
5575 TTCAAAGACCAAAACTTGTATA
194 TTCAAAGACCAAAACTTGTTTG
* * * *
5597 CAAAATGAAAAATTATTTAGACCAAATGATGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * * * * ** *
5662 TCAAACGAATGGATCTTGTTGAATACTTTAGGGTACTGAAGTTAAAAATTAACTCGTAAAAGTTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACT-ATAAAAGTTT
* * *
5727 GACAAGTTCGGAAGTTCATCCAAGAAC-AAGTAGAGAAATAATTCTCACGTAAATAAGTTTTTAA
130 GACAAGTTCGAAAGTTCGTCCAAGAACAAAG-AGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* *
5791 TTCGACA-ACCAAAACTTGTTTA
194 TTC-AAAGACCAAAACTTGTTTG
* * * ** * *
5813 CAAAACGACAAACTATTTAGACCAAATGATACAATTTGTCGAGCATGGAATATTCGGAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * *
5878 T-GAAAGGAATGGATCGTCTTCAATAC-TTAAGGATCCGAAGTTATAAAAA-AACTAGTAAAAGG
66 TCG-AAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTA-AAAAAGAACTA-TAAAAGT
*
5940 TTGACAAGTTCGGAAA-TTCGTCCAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTT
128 TTGACAAGTTC-GAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
6004 AATTCAAAGACCGAAAGTTCTTTA
192 AATTCAAAGACCAAAACTTGTTTG
* * *
6028 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATTGAATGTTCAAAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * * * * * *
6093 TCTAAGGAATGGATCTTATTGAATACTTGAGGGAGCCAAAGTTAAAAAATAACTCGTAAAAGTTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACT-ATAAAAGTTT
* * *
6158 GACATGTTCGAAAGTTCGTCCAAGAACCAAGAGAGGAACAATTCTCACGTAAATAAGTTTTTAAT
130 GACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
*
6223 TCAAAGATCAAAACCTT-TTTG
195 TCAAAGACCAAAA-CTTGTTTG
*
6244 CAAAAT-A-AAA--A---A-A-C------T---ATTTCTCGAGCATGGAATGTTC-AGAAAATTG
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTG
* * * * *
6290 CTCGAAAGAATAGATCGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTT
65 CTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGTT
* * * *
6355 TTACAAGTTC-AGAATTTCATCCAAAAACAAAGAGAGAAACAATTCTCGA-GTAAATAAGTTTTT
129 TGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC-ACGTAAATAAGTTTTT
* *
6418 TATTCAAAGATCAAAACTTGTTTG
192 AATTCAAAGACCAAAACTTGTTTG
* * * *
6442 CAAAATGACAAATTATTTAGTCCAAATGATGCGATTTCCTGAGCATCGAATGTTC-AGAAAATTG
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTG
* * * * ** * *
6506 CTCTAAGGAATGGATGTTGTAGAATACTTTTGGGAACCGAAGTTAAAAAATAACTGGTAAAAGTT
65 CTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACT-ATAAAAGTT
* *
6571 TGACAAGTTCGAAAGTTCGTAC-AGAGAC-AAGGGAGAAACAATTCTCACGTAAATAAGTTTTTA
129 TGACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
6634 ATTCAAAGACCAAAACTTGTTTG
193 ATTCAAAGACCAAAACTTGTTTG
* * * *
6657 CAAAATGACAAACTATTTAGGCCAAATGATGTGATTTGCCGA-CATTGGAATATTC-AGAAAATT
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA-TGGAATGTTCGA-AAAATT
* * * * * *
6720 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAAGATCCGATGTTATAAAAGAACTAGGAAAAGT
64 GCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGT
*
6785 TTGACAAGTTCGAAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
128 TTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* * *
6850 ATTCAAAGACAAAAACTTGTATA
193 ATTCAAAGACCAAAACTTGTTTG
* *
6873 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC-ATGGATGGAATGATCGAAAAATTG
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA-GCATGGAATGTTCGAAAAATTG
** * * ** * * * *
6937 CTAAAAAGAATGGATCTTCTT-ATTACTTT-AGGAAAGTGATGTTAAAAAATATCTCGTAAAAGT
65 CTCGAAGGAATGGATCTTCTTGAATACTTTAAGG-AACCGAAGTTAAAAAAGAACT-ATAAAAGT
* * * * *
7000 TTGATAGGTTC-AGAAGTTCGTCCAAGAACAAAGAGAGAAATAATTCCCATGTAAATAAGTTTTT
128 TTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
7064 AATTCAAAGACCAAAACTTGTATA
192 AATTCAAAGACCAAAACTTGTTTG
* * * * *
7088 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGGATAGCATGTTCGGAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * ** * *
7153 TCAAAGGAATGGATCTTGTTGAATACTTTAGGGAACTAAAGTTAAAAAATAACTCGTAAAAGTTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACT-ATAAAAGTTT
* * * *
7218 GACAAGTTTGGAAGTTCGTCGAAGAACAGAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
130 GACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
7283 TCAACA-ACCAAAACTTGTTTG
195 TCAA-AGACCAAAACTTGTTTG
** * ** ** * * *
7304 CAAAACAACAAACTATTTAGTCCAAATGATATGATTTGTCGAGCATGGAATATTCGGAAAATTAC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
** * * * * * *
7369 TTAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTATAAGTCT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGTTT
* * * *
7434 GACAAGTTCGGAAGTTCGTCCAAGAACAAAGACAAAAACAATTCTCACGTAAATAAGTTTTGAAT
130 GACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* *
7499 TCAAAGACCAAAACTTTTTTA
195 TCAAAGACCAAAACTTGTTTG
* * * * * * *
7520 CAAAATGACAAACTATTTAGATCAAATGATCCGACTTCCCAAGGATGGAATGTTCGGAAAATAGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* ** * * * * * *
7585 TCTAAAAAATGGATCATGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACT-ATAAAAGTTT
* * * *
7650 GACAAGTTCGAAAGTTTGTCCAAGAACAATGACTAG-AACAATTCTCACAT-AATAAGTTTTTAA
130 GACAAGTTCGAAAGTTCGTCCAAGAACAAAGA-GAGAAACAATTCTCACGTAAATAAGTTTTTAA
*
7713 TTTAAAGACCAAAACTTGTTTG
194 TTCAAAGACCAAAACTTGTTTG
* * * *
7735 CAAAATGACAAATTATTTAGACCAAATGATGCGATTTCCCAAGTACGGAATGTTC-AGAAAATTG
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTG
* * * * ** *
7799 CTCGGAA-GAATAGATC--GTTGAATAATTTAAGGATCAAAAGTTATAAAAGAACTAGTAAAAGT
65 CTC-GAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGT
* * * * *
7861 TTGACAGGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAATAATTCTCACGTAAATAAGTTTTAA
128 TTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
*
7926 ATTCGAAGACCAAAACTTGTTTG
193 ATTCAAAGACCAAAACTTGTTTG
* * * * *
7949 CAAAATGACAAACTATTTAGGCCAAATGATGCGATTTGCAGAGCATGAAATATTC-AGAAAATTG
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTG
* * * * *
8013 CTCGAAGGAATGGATCGTCTTTAATATTTTAAGGAATCGAAGTTATAAAAGAACTAGTAAAAGTT
65 CTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTA-TAAAAGTT
* * *
8078 TGACAAATTCGAAAGTTCGTCCATGAACAAAGAGAGAAACAATTCTCACGTAAAT-ATTTTTTAA
129 TGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* * *
8142 TTCAAAGACCAAAACTGGTATA
194 TTCAAAGACCAAAACTTGTTTG
* * * * *
8164 CAAAATGACAAACTATTTATACCAAATGATGTGATTTCCCAAGGATGGAATGTTCGGAAAATTGC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * * * * *
8229 TCAAAGGAATGGATCTTCTTGAATACTTTAGGGAACTGAAGCTAAAAAATAACTCGTAAAAGTTT
66 TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACT-ATAAAAGTTT
* * * * * * *
8294 TACAAGTTTGGAAGTTCGTCCAAGAATAAAGGGAGAAACAATTGTCAAGTAAATAAGTTTTTAAT
130 GACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
*
8359 TCAATGACCAAAACTTGTTTG
195 TCAAAGACCAAAACTTGTTTG
** * * * ** *
8380 CAAAACAACAAACTATTTAGACCAAATGATACGATTTGCTGAGCATGGAATAATCGAAAAATTGA
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* * *
8445 T-GAAAGGAATGG-TTTGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAA-AACTAGTATAAG
66 TCG-AAGGAATGGATCT-TCTTGAATACTTTAAGGAACCGAAGTTA-AAAAAGAACTA-TAAAAG
* **
8507 TTTGACAAGTTCGAAAGTTCGTCCAAGAATAAAGAGAGAAACAATTCTCACGTAAATAAAATTTT
127 TTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
8572 AAGTCAAAGACCAAAACTTGTTTA
192 AATTCAAAGACCAAAACTTGTTTG
* * * * *
8596 CATAATGACAAACTATTTAAACCAAATGATGTGATTTCCCGAGCATTGG-ATGTTCGGAAAATTA
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA-TGGAATGTTCGAAAAATTG
* * * * * * *
8660 CTCTAAGGAAT-GAGTCCTGTTGAATACTTTAGGGAACCAAAGTTAAAAAATAAACCTGTAAAAG
65 CTCGAAGGAATGGA-TCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAA-GAA-CTATAAAAG
* * * * *
8724 TTTGACAATTTCGAAAGTTCATCCATGAACAAAAAGAGAAACAATTTTCACGTAAATAAGTTTTT
127 TTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
8789 AATTCTAAGACCAAAACTTGTTTG
192 AATTCAAAGACCAAAACTTGTTTG
* *
8813 CAAAATGATAAACAATTTAGACCAAATGATGCGATTTC
1 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
8851 AAGATCATG
Statistics
Matches: 7353, Mismatches: 1105, Indels: 343
0.84 0.13 0.04
Matches are distributed among these distances:
197 5 0.00
198 155 0.02
199 2 0.00
200 3 0.00
201 3 0.00
202 172 0.02
203 2 0.00
204 1 0.00
205 2 0.00
207 2 0.00
208 1 0.00
209 1 0.00
211 99 0.01
212 4 0.00
213 155 0.02
214 373 0.05
215 1444 0.20
216 4746 0.65
217 181 0.02
218 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (215 bp):
CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
TCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTATAAAAGTTTG
ACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
CAAAGACCAAAACTTGTTTG
Done.