Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002809.1 Kokia drynarioides strain JFW-HI SEQ_115160, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 30247
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:4139 original size:22 final size:22

Alignment explanation


    Indices: 4100--4141  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       4090 AACTATGAAA

                        **        
       4100 TAGAAATAAACACCTAAATACC
          1 TAGAAATAAACAAATAAATACC

                      *         
       4122 TAGAAATAAATAAATAAATA
          1 TAGAAATAAACAAATAAATA

       4142 AAGACAAGAA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  22   17  1.00

ACGTcount: A:0.62, C:0.12, G:0.05, T:0.21


Consensus pattern (22 bp):   
TAGAAATAAACAAATAAATACC

Found at i:25564 original size:32 final size:32

Alignment explanation


    Indices: 25523--25587  Score: 130
    Period size: 32  Copynumber: 2.0  Consensus size: 32

      25513 TATATACATA

                                            
      25523 TTATTAGCAAAGATACACTAACCTAACAAGTT
          1 TTATTAGCAAAGATACACTAACCTAACAAGTT

                                            
      25555 TTATTAGCAAAGATACACTAACCTAACAAGTT
          1 TTATTAGCAAAGATACACTAACCTAACAAGTT

             
      25587 T
          1 T

      25588 GTTACTTTAA


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   33  1.00

ACGTcount: A:0.43, C:0.18, G:0.09, T:0.29


Consensus pattern (32 bp):   
TTATTAGCAAAGATACACTAACCTAACAAGTT
Done.