Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002815.1 Kokia drynarioides strain JFW-HI SEQ_115169, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9708
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36


Found at i:7964 original size:2 final size:2

Alignment explanation


    Indices: 7957--7997  Score: 82
    Period size: 2  Copynumber: 20.5  Consensus size: 2

       7947 ACCAAGTGAT

                                                                         
       7957 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

       7998 ATCTTATATG


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51


Consensus pattern (2 bp):   
TC

Found at i:8740 original size:2 final size:2

Alignment explanation


    Indices: 8733--8771  Score: 51
    Period size: 2  Copynumber: 19.5  Consensus size: 2

       8723 TTATCATCTT

                                  *                   *     *         
       8733 TC TC TC TC TC TC TC TT TC TC TC TC TC TC GC TC GC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

       8772 GTCTGTCTTT


Statistics
Matches: 31,  Mismatches: 6, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.00, C:0.46, G:0.05, T:0.49


Consensus pattern (2 bp):   
TC

Found at i:8750 original size:16 final size:16

Alignment explanation


    Indices: 8729--8783  Score: 65
    Period size: 16  Copynumber: 3.4  Consensus size: 16

       8719 GGACTTATCA

                            
       8729 TCTTTCTCTCTCTCTC
          1 TCTTTCTCTCTCTCTC

                            
       8745 TCTTTCTCTCTCTCTC
          1 TCTTTCTCTCTCTCTC

            *  **      *   *
       8761 GCTCGCTCTCTGTCTG
          1 TCTTTCTCTCTCTCTC

                   
       8777 TCTTTCT
          1 TCTTTCT

       8784 ATTTGTTTAA


Statistics
Matches: 31,  Mismatches: 8, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  16   31  1.00

ACGTcount: A:0.00, C:0.40, G:0.07, T:0.53


Consensus pattern (16 bp):   
TCTTTCTCTCTCTCTC
Done.