Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002817.1 Kokia drynarioides strain JFW-HI SEQ_115171, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12365
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:11766 original size:7 final size:7

Alignment explanation


    Indices: 11754--11780  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

      11744 CCACTGTTTA

                   
      11754 ATTCATC
          1 ATTCATC

                   
      11761 ATTCATC
          1 ATTCATC

                   
      11768 ATTCATC
          1 ATTCATC

                  
      11775 ATTCAT
          1 ATTCAT

      11781 AATAACATAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.30, C:0.26, G:0.00, T:0.44


Consensus pattern (7 bp):   
ATTCATC

Done.