Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000283.1 Kokia drynarioides strain JFW-HI SEQ_111035, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3023
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31


Found at i:2751 original size:13 final size:14

Alignment explanation


    Indices: 2727--2758  Score: 57
    Period size: 13  Copynumber: 2.4  Consensus size: 14

       2717 ATGATGCTAT

                          
       2727 GAAAAAATGAAAAA
          1 GAAAAAATGAAAAA

                          
       2741 GAAAAAA-GAAAAA
          1 GAAAAAATGAAAAA

                 
       2754 GAAAA
          1 GAAAA

       2759 GAATAGAGCA


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  13   11  0.61
  14    7  0.39

ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03


Consensus pattern (14 bp):   
GAAAAAATGAAAAA
Done.