Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002832.1 Kokia drynarioides strain JFW-HI SEQ_115201, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3733
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.36


Found at i:932 original size:30 final size:30

Alignment explanation


    Indices: 898--957  Score: 111
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        888 TGTACTGCTC

                                 *        
        898 CTCTATTTGTTTGGAAACTTCTAATTTTGT
          1 CTCTATTTGTTTGGAAACTTCAAATTTTGT

                                          
        928 CTCTATTTGTTTGGAAACTTCAAATTTTGT
          1 CTCTATTTGTTTGGAAACTTCAAATTTTGT

        958 TTTCTCTGCC


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  30   29  1.00

ACGTcount: A:0.22, C:0.13, G:0.13, T:0.52


Consensus pattern (30 bp):   
CTCTATTTGTTTGGAAACTTCAAATTTTGT
Done.