Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002841.1 Kokia drynarioides strain JFW-HI SEQ_115219, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1000
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23


Found at i:977 original size:206 final size:200

Alignment explanation


    Indices: 613--992  Score: 519
    Period size: 206  Copynumber: 1.9  Consensus size: 200

        603 CCTAGCTTCT

                                            *    **        *                 
        613 TGATGAGATACAGAGAAGCGGATTGAAACAAGTAAGGTGGTCATCTTTCTGATGAGATACAAAGA
          1 TGATGAGATACAGAGAAGCGGATTGAAACAAGCAAGGCAGTCATCTTCCTGATGAGATACAAAGA

                *  *   *  *    *                 *                           
        678 AGAATACCAACTCAGGACTTGATGCGAGCAAATCTTCGAACCCAGCTTCCTAATGAGATACTGAG
         66 AGAAAACAAACCCACGACTCGATGCGAGCAAATCTTCAAACCCAGCTTCCTAATGAGATACTGAG

                        *                   *                                
        743 AAGCAGGTCGAAGCAATAAAATGGTTAGCTTCTTGATGAGATACTGAAAAGTGAATCAAATTCGT
        131 AAGCAGGTCGAAACAATAAAATGGTTAGCTTCCTGATGAGATACTGAAAAGTGAATCAAATTCGT

                 
        808 CTTTC
        196 CTTTC

                       *                     * *                            *
        813 TGATGAGATACGGAGAAGCGGATTGAAACAAGCGATGCAGTCATCTTCCTGATGAGATACTGAGG
          1 TGATGAGATACAGAGAAGCGGATTGAAACAAGCAAGGCAGTCATCTTCCTGATGAGATAC--A-A

                                          *                           *      
        878 AGAAGACCAAATCAAACCCACG-CTCGATGTGAGCAAATCTTCAAACCCCAGCTTCCTGATGAGA
         63 AGAAGA--AAA-CAAACCCACGACTCGATGCGAGCAAATCTTCAAA-CCCAGCTTCCTAATGAGA

                                *                              
        942 TACTGAGAAGCAGGTCGAAATAATAAAATGGTTAGCTTCCTGATGAGATAC
        124 TACTGAGAAGCAGGTCGAAACAATAAAATGGTTAGCTTCCTGATGAGATAC

        993 AGAGAAGT


Statistics
Matches: 154,  Mismatches: 19, Indels: 8
        0.85            0.10        0.04

Matches are distributed among these distances:
 200   53  0.34
 202    1  0.01
 203    6  0.04
 205   22  0.14
 206   72  0.47

ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23


Consensus pattern (200 bp):   
TGATGAGATACAGAGAAGCGGATTGAAACAAGCAAGGCAGTCATCTTCCTGATGAGATACAAAGA
AGAAAACAAACCCACGACTCGATGCGAGCAAATCTTCAAACCCAGCTTCCTAATGAGATACTGAG
AAGCAGGTCGAAACAATAAAATGGTTAGCTTCCTGATGAGATACTGAAAAGTGAATCAAATTCGT
CTTTC
Done.