Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002848.1 Kokia drynarioides strain JFW-HI SEQ_115239, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 726

Length: 1211
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40


Found at i:634 original size:215 final size:215

Alignment explanation


    Indices: 1--1072  Score: 1209
    Period size: 215  Copynumber: 5.0  Consensus size: 215

                              *                          *  *                
          1 TTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTATATATGTGAGAATTG-TT-TC
          1 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC

                *      *             **         *      *  *      *           
         64 TCTTCGTTCTTAGACGAACTTTCGTGCTTG-TGAAAGTTTTACTAGGTCTTTTATAACTTTGGTT
         66 TCTTTGTTCTTGGACGAACTTTCG-AATTGCT-AAACTTTTACGAGTTCTTTTTTAACTTTGGTT

              *            * *            *    *                       **    
        128 CCATAAAGTATTCAAGACGATCCATTCCTTCGAGCTATTTTCCGAACATTCCATGCTCGACAAAT
        129 CCCTAAAGTATTCAACAAGATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGCTCGGGAAAT

                                   
        193 CGCATCATTTGGTCTAAATAGTT
        194 CGCATCATTTGGTCTAAATAG-T

                 *     *                          *                          
        216 TTGTCTTTTTGCAAACAAGTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTC
          1 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC

                                   *      *                *                 
        281 TCTTTGTTCTTGGACGAACTTTCAAACTTGTTAAACTTTTACGAGTTATTTTTTAACTTTGGTTC
         66 TCTTTGTTCTTGGACGAACTTTCGAA-TTGCTAAACTTTTACGAGTTCTTTTTTAACTTTGGTTC

                                             *  *    *          *           *
        346 CCTAAAGTATTCAACAAGATCCATTCCTTTGAGAAAATTTCTGAACATTCCAAGCTCGGGAAATA
        130 CCTAAAGTATTCAACAAGATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGCTCGGGAAATC

            **                   
        411 TTATCATTTGGTCTAAATAGT
        195 GCATCATTTGGTCTAAATAGT

                                                            *                
        432 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTC
          1 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC

                          *       *       *                           *      
        497 TCTTTGTTCTTGGATGAACTTTTGAATTGCAAAACTTTTACGAGTTCTTTTTTAACTTCGGTTCC
         66 TCTTTGTTCTTGGACGAACTTTCGAATTGCTAAACTTTTACGAGTTCTTTTTTAACTTTGGTTCC

                   *            *       *    *            *                  
        562 CTAAAGTTTTCAACAAGATCAATTCCTTAGAGCTATTTTCCGAACACTCCATGCTCGGGAAATCG
        131 CTAAAGTATTCAACAAGATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCG

                                
        627 CATCATTTGGTCTAAATAGT
        196 CATCATTTGGTCTAAATAGT

            *  *                    *     * *             *                  
        647 ATGCCATTTTGTAAACAAGTTTTGTTCTTTTAGTTAAAAACTTATTCACGTGAGAATTGTTTCTC
          1 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC

                            *    *         *                *                
        712 TCTTTGTTCTTGGACGTACTTCCGAGCA-TGGTAAACTTTTACGAGTTATTTTTTAACTTTGGTT
         66 TCTTTGTTCTTGGACGAACTTTCGA--ATTGCTAAACTTTTACGAGTTCTTTTTTAACTTTGGTT

                 *         *        *                  *            *        
        776 CCCTACAGTATTCAATAAGATCCAATCC-TT---CAATTTTCCTAACATTCCATGCGCGGGAAAT
        129 CCCTAAAGTATTCAACAAGATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGCTCGGGAAAT

                                * 
        837 CGCATCATTTGGTCTAAATATT
        194 CGCATCATTTGGTCTAAATAGT

              *        **       *  *                          *         *    
        859 TTATCATTTTGCGAACAAGTATTAGTCTTTGAATT-AAAA---ATTTACGAGAGAATTGTGTCTC
          1 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC

                *    *       *  *                   *  *   *     **      *** 
        920 TCTTGGTTCATGGACGATCTATCGAACTTGTCT-AACTTAGT-GGAGATCTTTCATAACTTAACT
         66 TCTTTGTTCTTGGACGAACTTTCGAA-TTG-CTAAACTT-TTACGAGTTCTTTTTTAACTTTGGT

               *            * *                                          *  *
        983 TCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGCTCGGCAAG
        128 TCCCTAAAGTATTCAACAAGATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGCTCGGGAAA

              *         *      *   
       1048 TCCCATCATTTGATCTAAAGAGT
        193 TCGCATCATTTGGTCTAAATAGT

              
       1071 TT
          1 TT

       1073 TGGCCTTTAA


Statistics
Matches: 722,  Mismatches: 121, Indels: 31
        0.83            0.14        0.04

Matches are distributed among these distances:
 206    1  0.00
 208   83  0.11
 209    4  0.01
 211    4  0.01
 212  120  0.17
 215  241  0.33
 216  142  0.20
 217  126  0.17
 218    1  0.00

ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40


Consensus pattern (215 bp):   
TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
TCTTTGTTCTTGGACGAACTTTCGAATTGCTAAACTTTTACGAGTTCTTTTTTAACTTTGGTTCC
CTAAAGTATTCAACAAGATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCG
CATCATTTGGTCTAAATAGT
Done.