Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002856.1 Kokia drynarioides strain JFW-HI SEQ_115252, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7331
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32


Found at i:119 original size:25 final size:24

Alignment explanation


    Indices: 74--122  Score: 62
    Period size: 25  Copynumber: 2.0  Consensus size: 24

         64 ACCCACAGGA

                          * *       
         74 ATTATAAAAATAAATTTAATAATT
          1 ATTATAAAAATAAAGTAAATAATT

                         *           
         98 ATTATAAAAAATATAGTAAATAATT
          1 ATTAT-AAAAATAAAGTAAATAATT

        123 CTATCATAAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  24    5  0.24
  25   16  0.76

ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39


Consensus pattern (24 bp):   
ATTATAAAAATAAAGTAAATAATT
Done.