genome.fa.s2858.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002858.1 Kokia drynarioides strain JFW-HI SEQ_115257, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  209013

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5399--5451	26	2.0	27	96	3	99	33	22	11	32	1.90
10126--10275	74	2.0	75	85	3	205	24	18	30	28	1.97
10126--10275	37	4.0	37	85	2	185	24	18	30	28	1.97
13746--13776	16	1.9	16	93	0	53	61	0	16	22	1.34
14638--14712	38	2.0	37	81	2	87	33	13	20	33	1.91
14689--14847	37	4.3	36	73	13	119	23	19	27	28	1.98
14684--14760	38	2.1	36	83	9	93	23	16	28	31	1.96
14690--14850	74	2.2	74	83	6	193	23	19	28	28	1.98
14705--14856	37	4.1	36	80	5	160	25	19	27	28	1.98
20456--20493	17	2.2	18	85	4	51	60	7	7	23	1.51
22026--22065	6	7.2	6	83	16	59	0	17	0	82	0.67
22033--22064	15	2.1	15	100	0	64	0	12	0	87	0.54
23388--23428	18	2.3	18	95	0	73	9	31	9	48	1.69
24676--24884	20	10.4	20	89	2	278	15	18	30	35	1.92
34250--34582	166	2.0	167	97	1	623	36	11	21	30	1.89
44433--45042	304	2.0	304	98	0	1184	49	13	8	28	1.72
50474--50536	32	2.0	32	84	6	85	47	0	12	39	1.42
50484--50546	32	2.0	32	84	6	83	47	1	11	39	1.49
51651--51899	124	2.0	124	99	0	489	34	20	16	28	1.94
55395--55439	20	2.2	20	92	0	72	24	24	13	37	1.91
56479--56505	13	2.1	13	100	0	54	33	14	7	44	1.73
58025--58105	25	3.2	25	66	22	69	24	18	14	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57999--58105	51	2.1	51	91	0	169	26	15	16	41	1.89
58014--58130	51	2.3	51	90	0	180	28	17	16	37	1.92
65307--65373	30	2.2	30	78	5	73	34	2	2	59	1.28
73484--73516	16	2.0	17	88	5	50	27	6	3	63	1.32
74044--74090	23	2.0	23	100	0	94	57	0	21	21	1.41
74948--75009	21	3.0	21	69	9	54	22	14	29	33	1.94
76496--76547	13	4.1	13	75	5	52	32	19	11	36	1.87
76496--76546	25	2.0	25	85	7	68	33	19	11	35	1.88
80678--80728	25	2.0	25	100	0	102	35	11	11	41	1.78
81625--81670	21	2.3	19	85	10	65	21	19	4	54	1.61
81626--81671	20	2.2	21	92	3	76	19	19	4	56	1.58
84579--84635	22	2.8	20	79	12	62	24	17	7	50	1.70
84579--84635	20	2.7	22	81	7	66	24	17	7	50	1.70
85049--85097	20	2.5	19	76	6	53	67	8	6	18	1.37
87768--87921	41	3.7	41	88	1	200	25	25	12	35	1.92
94215--94271	24	2.4	24	90	0	96	49	26	10	14	1.75
94773--94852	41	2.0	41	80	9	92	30	22	10	37	1.87
98001--98052	27	1.9	27	84	7	70	57	15	7	19	1.62
100393--100481	24	3.5	24	71	11	79	31	17	31	19	1.95
100358--100506	52	2.9	52	88	2	210	36	14	30	19	1.91
100343--100673	28	12.2	28	75	9	165	38	15	27	18	1.91
100410--100615	80	2.6	79	79	4	218	36	15	28	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100490--100630	52	2.6	54	78	6	126	36	15	27	19	1.92
100546--100694	28	5.3	28	90	0	217	34	18	29	17	1.94
106769--106820	21	2.5	21	81	6	61	26	13	28	30	1.94
112024--112144	49	2.5	48	78	5	118	24	24	19	30	1.98
112115--112193	41	1.9	41	94	0	140	29	25	20	25	1.99
113997--114066	20	3.5	20	71	21	65	52	5	18	22	1.66
114074--114269	20	9.7	20	69	11	78	55	11	16	15	1.69
114223--114861	20	32.9	20	65	17	122	54	8	16	20	1.68
114234--114570	59	5.8	57	70	9	162	53	8	15	21	1.69
114364--114570	58	3.6	57	70	8	159	53	9	15	20	1.70
114608--114661	18	3.1	18	83	2	74	51	9	22	16	1.72
115979--116019	18	2.3	18	87	8	57	63	0	36	0	0.95
121162--121196	3	11.7	3	93	0	61	65	0	2	31	1.07
122261--122345	7	12.6	7	76	7	86	49	23	10	16	1.77
122261--122345	27	3.1	27	94	0	143	49	23	10	16	1.77
124032--124089	31	1.9	30	82	10	73	39	1	5	53	1.33
127783--127857	24	3.1	24	88	0	105	22	12	10	54	1.67
127793--127869	24	3.2	24	88	0	91	24	14	10	50	1.74
128965--128990	13	2.0	13	100	0	52	46	7	0	46	1.31
132058--132098	21	2.0	21	90	0	64	31	7	39	21	1.81
133106--133158	26	2.0	26	96	0	97	28	24	15	32	1.95
134334--134637	148	2.0	149	94	1	531	37	16	10	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136388--136416	3	9.7	3	100	0	58	0	34	0	65	0.93
137300--137349	25	2.0	25	88	4	73	64	2	2	32	1.16
137311--137353	8	5.1	9	81	13	56	67	0	2	30	1.03
137315--137359	8	5.5	8	81	5	54	66	0	4	28	1.11
137311--137363	25	2.2	24	86	10	72	67	0	3	28	1.07
138002--138047	4	11.5	4	82	17	60	76	2	0	21	0.90
138000--138047	9	5.3	9	80	9	62	75	2	0	22	0.91
138006--138044	19	2.1	19	90	9	62	76	2	0	20	0.90
138066--138134	28	2.3	29	80	16	79	56	10	4	28	1.51
138723--138808	43	2.0	43	97	0	163	30	17	16	36	1.92
139718--139825	36	3.0	36	97	0	198	37	9	21	32	1.85
148116--148147	12	2.4	14	85	15	50	25	3	0	71	1.00
148117--148146	13	2.4	13	94	5	53	26	3	0	70	1.03
150228--150270	17	2.4	18	81	14	54	18	0	2	79	0.85
150196--150270	12	6.0	12	76	17	57	17	5	2	74	1.12
150550--150659	57	1.9	57	94	0	193	32	14	8	44	1.75
151259--151297	8	4.8	8	87	12	53	74	0	12	12	1.08
152299--152344	25	1.9	25	86	8	69	32	4	6	56	1.45
164466--164501	15	2.3	16	90	4	56	2	50	5	41	1.40
164504--164558	9	5.9	9	79	12	58	83	0	12	3	0.77
164504--164559	17	3.1	19	75	17	57	83	0	12	3	0.76
164510--164556	12	3.8	12	76	20	51	82	0	12	4	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164507--164549	22	2.0	22	86	9	61	81	0	13	4	0.84
164504--164560	10	5.6	10	80	12	62	82	0	14	3	0.80
165275--165319	19	2.4	19	88	3	65	53	22	2	22	1.57
168846--168902	19	2.9	19	75	12	62	28	5	5	61	1.39
168950--169000	23	2.2	24	89	3	77	23	7	0	68	1.15
168942--169010	21	3.2	20	74	21	61	26	7	0	66	1.17
168996--169056	29	2.1	29	85	11	90	36	3	0	60	1.13
168997--169066	28	2.5	27	86	6	95	37	4	0	58	1.18
169199--169388	95	2.0	95	84	2	247	31	8	17	42	1.79
180211--180250	18	2.3	18	91	4	64	22	17	10	50	1.76
184915--184955	10	3.8	11	81	15	50	26	51	4	17	1.65
190389--190457	32	2.2	32	94	2	122	27	30	20	21	1.98
198969--199031	29	2.2	29	94	0	108	39	17	20	22	1.92
201083--201163	37	2.2	38	82	13	105	30	24	14	29	1.95
201965--201995	16	1.9	16	93	0	53	22	16	0	61	1.34
203191--203225	18	1.9	18	94	0	61	25	25	14	34	1.94
203919--203969	21	2.4	21	83	0	57	29	19	21	29	1.98
206979--207379	201	2.0	200	90	1	633	31	16	21	30	1.95

Tables:   1

The End!