Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002859.1 Kokia drynarioides strain JFW-HI SEQ_115259, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3218
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31


Found at i:1235 original size:28 final size:30

Alignment explanation


    Indices: 1184--1247  Score: 78
    Period size: 29  Copynumber: 2.2  Consensus size: 30

       1174 TATTTAATTT

                *              *          
       1184 AAAATTATTTTAACTTTTATAAT-ATAAAA
          1 AAAAATATTTTAACTTTTAAAATAATAAAA

             *           *                
       1213 ATAAATATTTT-ATTTTTAAAATAATAAAA
          1 AAAAATATTTTAACTTTTAAAATAATAAAA

                  
       1242 AAAAAT
          1 AAAAAT

       1248 TGCTAAATAA


Statistics
Matches: 29,  Mismatches: 5, Indels: 2
        0.81            0.14        0.06

Matches are distributed among these distances:
  28    9  0.31
  29   20  0.69

ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42


Consensus pattern (30 bp):   
AAAAATATTTTAACTTTTAAAATAATAAAA
Done.