Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002864.1 Kokia drynarioides strain JFW-HI SEQ_115267, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3390
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:1443 original size:48 final size:48

Alignment explanation


    Indices: 1391--1516  Score: 225
    Period size: 48  Copynumber: 2.6  Consensus size: 48

       1381 TAATTATGCT

                                                            
       1391 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
          1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA

                                                  *         
       1439 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
          1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA

             *     *                      
       1487 TTATTAAATGTTTTGTTTGTTAAATGCATC
          1 TCATTAAGTGTTTTGTTTGTTAAATGCATC

       1517 CCAGTTAAAT


Statistics
Matches: 75,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  48   75  1.00

ACGTcount: A:0.25, C:0.10, G:0.15, T:0.51


Consensus pattern (48 bp):   
TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA

Done.