Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002867.1 Kokia drynarioides strain JFW-HI SEQ_115271, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 790

Length: 1318
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39


Found at i:1156 original size:76 final size:76

Alignment explanation


    Indices: 1075--1227  Score: 270
    Period size: 76  Copynumber: 2.0  Consensus size: 76

       1065 TTAATTATCC

                                       *      *    *            *            
       1075 ATCTAATTTTTTATTATCTATTTTAGTTCTTAAATTTGCGTTGTTTGTCAAACCACCTAAAATGT
          1 ATCTAATTTTTTATTATCTATTTTAGTCCTTAAACTTGCATTGTTTGTCAAAACACCTAAAATGT

                       
       1140 ATGGAAAAGTT
         66 ATGGAAAAGTT

                                                                             
       1151 ATCTAATTTTTTATTATCTATTTTAGTCCTTAAACTTGCATTGTTTGTCAAAACACCTAAAATGT
          1 ATCTAATTTTTTATTATCTATTTTAGTCCTTAAACTTGCATTGTTTGTCAAAACACCTAAAATGT

                       
       1216 ATGGAAAAGTT
         66 ATGGAAAAGTT

             
       1227 A
          1 A

       1228 ATATTTGTCA


Statistics
Matches: 73,  Mismatches: 4, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  76   73  1.00

ACGTcount: A:0.32, C:0.12, G:0.11, T:0.44


Consensus pattern (76 bp):   
ATCTAATTTTTTATTATCTATTTTAGTCCTTAAACTTGCATTGTTTGTCAAAACACCTAAAATGT
ATGGAAAAGTT
Done.