Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000287.1 Kokia drynarioides strain JFW-HI SEQ_111039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2713
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39


Found at i:1141 original size:10 final size:9

Alignment explanation


    Indices: 1116--1140  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       1106 CTTTTACTAA

                     
       1116 TTTAAAATT
          1 TTTAAAATT

                     
       1125 TTTAAAATT
          1 TTTAAAATT

                   
       1134 TTTAAAA
          1 TTTAAAA

       1141 AACTTAAATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (9 bp):   
TTTAAAATT
Done.