Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002871.1 Kokia drynarioides strain JFW-HI SEQ_115279, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6019
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28


Found at i:1110 original size:28 final size:28

Alignment explanation


    Indices: 1050--1113  Score: 76
    Period size: 28  Copynumber: 2.3  Consensus size: 28

       1040 CAAACAACAG

                         *             *
       1050 CCCATTTAATCAATCCCTCTTGGGCAAG
          1 CCCATTTAATCAAACCCTCTTGGGCAAA

            *                        *   
       1078 TCCATTTAATCAAACCCT-TTCGGGGAAA
          1 CCCATTTAATCAAACCCTCTT-GGGCAAA

                    
       1106 CCCATTTA
          1 CCCATTTA

       1114 TCAGGTGGGT


Statistics
Matches: 30,  Mismatches: 5, Indels: 2
        0.81            0.14        0.05

Matches are distributed among these distances:
  27    2  0.07
  28   28  0.93

ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30


Consensus pattern (28 bp):   
CCCATTTAATCAAACCCTCTTGGGCAAA
Done.