Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002876.1 Kokia drynarioides strain JFW-HI SEQ_115287, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3006
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.35


Found at i:303 original size:3 final size:3

Alignment explanation


    Indices: 295--330  Score: 63
    Period size: 3  Copynumber: 12.0  Consensus size: 3

        285 CGACGTTACT

                                                  *        
        295 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC TTC
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC

        331 ACAAGCTAAC


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69


Consensus pattern (3 bp):   
TTC

Done.