Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002885.1 Kokia drynarioides strain JFW-HI SEQ_115297, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2343
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37


Found at i:1123 original size:17 final size:18

Alignment explanation


    Indices: 1096--1137  Score: 50
    Period size: 19  Copynumber: 2.3  Consensus size: 18

       1086 ATTATTTATC

                           *   
       1096 AAATAATTTAA-TTATATA
          1 AAAT-ATTTAACTTAAATA

                               
       1114 AAATATTTAACTTTAAATA
          1 AAATATTTAAC-TTAAATA

                 
       1133 AAATA
          1 AAATA

       1138 CTGAACATAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  17    6  0.29
  18    4  0.19
  19   11  0.52

ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40


Consensus pattern (18 bp):   
AAATATTTAACTTAAATA
Done.