Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002889.1 Kokia drynarioides strain JFW-HI SEQ_115302, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2017
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33


Found at i:1734 original size:24 final size:24

Alignment explanation


    Indices: 1704--1763  Score: 120
    Period size: 24  Copynumber: 2.5  Consensus size: 24

       1694 ATGCATGCAT

                                    
       1704 ACTACCGATACATTAATGCTAAAA
          1 ACTACCGATACATTAATGCTAAAA

                                    
       1728 ACTACCGATACATTAATGCTAAAA
          1 ACTACCGATACATTAATGCTAAAA

                        
       1752 ACTACCGATACA
          1 ACTACCGATACA

       1764 ACTCAAGTCA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   36  1.00

ACGTcount: A:0.45, C:0.23, G:0.08, T:0.23


Consensus pattern (24 bp):   
ACTACCGATACATTAATGCTAAAA
Done.