Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000289.1 Kokia drynarioides strain JFW-HI SEQ_111041, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3624
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.37


Found at i:2032 original size:13 final size:13

Alignment explanation


    Indices: 2000--2038  Score: 51
    Period size: 13  Copynumber: 2.8  Consensus size: 13

       1990 TAGCTTTAAC

                         * 
       2000 TTAGATTAATTTAGT
          1 TTAGATTAA--TACT

                         
       2015 TTAGATTAATACT
          1 TTAGATTAATACT

                       
       2028 TTAGATTAATA
          1 TTAGATTAATA

       2039 TCTCTTACAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  13   14  0.61
  15    9  0.39

ACGTcount: A:0.38, C:0.03, G:0.10, T:0.49


Consensus pattern (13 bp):   
TTAGATTAATACT
Done.