Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002891.1 Kokia drynarioides strain JFW-HI SEQ_115305, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11773
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:5013 original size:11 final size:10

Alignment explanation


    Indices: 4972--5014  Score: 52
    Period size: 10  Copynumber: 4.3  Consensus size: 10

       4962 TATAAAAATG

                      
       4972 TATTAAAT-T
          1 TATTAAATAT

            *         
       4981 CATTAAATAT
          1 TATTAAATAT

               *      
       4991 TATAAAATAT
          1 TATTAAATAT

                       
       5001 TATTAATATAT
          1 TATTAA-ATAT

               
       5012 TAT
          1 TAT

       5015 GGAAAACATA


Statistics
Matches: 28,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
   9    7  0.25
  10   14  0.50
  11    7  0.25

ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49


Consensus pattern (10 bp):   
TATTAAATAT
Done.