genome.fa.s2901.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002901.1 Kokia drynarioides strain JFW-HI SEQ_115317, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113816

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1419--1609	99	1.9	99	94	0	337	41	7	9	40	1.66
2443--2480	10	3.9	10	86	6	51	39	0	7	52	1.31
7021--7083	29	2.1	30	91	8	103	15	25	3	55	1.55
7947--7971	3	8.3	3	100	0	50	68	0	32	0	0.90
7970--7998	3	9.7	3	100	0	58	34	0	34	31	1.58
10771--10811	16	2.3	18	84	12	50	26	0	4	68	1.10
11423--11476	20	2.7	20	100	0	108	31	24	20	24	1.98
11996--12084	15	5.9	15	67	7	56	31	25	19	23	1.98
16112--16179	15	4.5	15	77	0	64	27	20	23	27	1.99
19866--19896	6	5.0	6	96	4	53	19	0	0	80	0.71
24432--24915	40	12.1	40	86	2	652	23	18	27	30	1.98
29302--29349	20	2.4	20	82	0	51	31	33	8	27	1.86
34985--35050	32	2.1	32	100	0	132	37	36	0	25	1.57
34985--35033	16	3.1	16	69	30	50	36	36	0	26	1.57
34998--35049	16	3.2	16	71	28	56	36	38	0	25	1.56
37903--37959	21	2.7	21	78	13	62	31	22	15	29	1.95
38641--38877	52	4.6	52	88	0	332	38	22	12	26	1.89
43186--43246	24	2.5	24	81	0	68	26	11	11	50	1.72
43218--43271	20	2.4	24	73	26	71	27	11	14	46	1.79
43226--43266	20	2.0	20	100	0	82	24	9	19	46	1.80
45191--45245	24	2.3	24	87	0	74	25	14	12	47	1.80
47146--47623	123	3.9	123	89	1	701	37	11	8	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47148--47623	245	1.9	245	90	1	749	37	11	8	42	1.71
47654--48067	141	3.0	139	86	4	550	26	20	21	31	1.98
48062--48546	36	13.3	36	80	6	478	27	23	13	35	1.93
48062--48546	74	6.7	73	79	7	468	27	23	13	35	1.93
48062--48546	110	4.4	108	80	6	487	27	23	13	35	1.93
50805--50847	21	2.2	18	84	12	50	30	2	6	60	1.35
52278--52353	38	2.0	37	85	7	100	48	9	9	32	1.67
53949--54004	28	2.0	29	92	3	96	55	0	1	42	1.10
54115--54163	18	2.7	18	96	3	89	34	34	2	28	1.69
61047--61136	24	3.7	25	81	3	103	31	21	23	24	1.98
67791--67848	21	2.7	22	79	17	68	36	0	0	63	0.94
68087--68157	17	4.2	17	79	0	88	39	2	4	53	1.35
68081--68147	34	2.0	34	93	0	116	32	2	7	56	1.42
68761--68798	3	12.7	3	100	0	76	68	0	0	31	0.90
69951--70167	29	7.4	29	68	17	94	33	29	5	30	1.82
70171--70438	29	9.1	29	67	13	86	32	23	6	37	1.80
70238--70344	30	3.6	31	68	13	89	32	19	4	42	1.72
70173--70364	59	3.2	59	81	8	189	33	21	6	37	1.80
70780--70811	15	2.2	14	94	5	55	25	15	15	43	1.86
82650--83365	209	3.4	207	87	2	943	35	17	23	23	1.95
83685--83755	17	4.2	17	83	0	97	40	2	2	53	1.30
83679--83745	34	2.0	34	90	0	107	34	2	5	56	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85599--85906	29	10.5	29	72	12	105	35	24	3	36	1.74
85688--85965	29	9.6	29	71	8	111	34	24	3	37	1.74
85628--85906	88	3.2	86	78	5	238	35	24	3	36	1.74
85778--85906	28	4.5	28	74	7	89	37	20	3	37	1.72
89883--89950	33	2.1	33	100	0	136	45	23	11	19	1.83
95125--95156	16	2.0	16	93	0	55	34	12	21	31	1.91
95354--95405	27	1.9	27	96	0	95	19	23	11	46	1.82
100148--100178	6	5.0	6	96	4	53	51	0	32	16	1.44
104200--104264	6	10.8	6	94	0	67	44	0	0	55	0.99
104231--104424	6	32.8	6	95	3	286	20	0	12	67	1.23
105864--105903	17	2.3	18	83	12	57	47	0	10	42	1.37
112219--112392	88	2.0	88	81	2	206	52	13	5	28	1.62
112665--112697	16	2.1	15	94	5	57	51	6	0	42	1.26

Tables:   1

The End!