Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002909.1 Kokia drynarioides strain JFW-HI SEQ_115338, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 925

Length: 1543
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33


Found at i:446 original size:17 final size:17

Alignment explanation


    Indices: 424--456  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        414 CACTAACACT

                     *       
        424 AAAATGCAATGACAATA
          1 AAAATGCAACGACAATA

                            
        441 AAAATGCAACGACAAT
          1 AAAATGCAACGACAAT

        457 GTTTAGCAAC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15


Consensus pattern (17 bp):   
AAAATGCAACGACAATA
Done.