Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01002915.1 Kokia drynarioides strain JFW-HI SEQ_115346, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2751
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Found at i:393 original size:216 final size:214
Alignment explanation
Indices: 1--2751 Score: 2882
Period size: 216 Copynumber: 12.8 Consensus size: 214
* * * *
1 ACAAACTATTCTCATCACAATAAGTTTTTAATTCAAATACAAAAAGCTG-TTTACAAAATGACAA
1 ACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAG-TGTTTTACAAAATGACAA
* *
65 ACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTTCTCGAAAGAGTG
65 AC-AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCG-AAAATTTCTCGAAGGAATG
* * *
130 AATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG
128 GATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
195 AAGTTCGACCAAGGACCAATAG
193 AAGTTCGACCAAGGACCAATAG
* * *
217 ACAAACAATTCTTACCAAAATAAGTTTTTAATTCAAAGATAAAAACTGTTTTACAAAATGACAAA
1 ACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAA
* * * * * *
282 CAATTTTGACCAAATGATACGATTTCCCTAGAATGGAATGTTCAGAAAATTTCTCGAAGGAATGC
66 CAA-TTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-GAAAATTTCTCGAAGGAATGG
* * *
347 ATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCGGA
129 ATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * * *
412 TGTTCGTCCAAGAACCAAGAG
194 AGTTCGACCAAGGACCAATAG
* * * *
433 ACAAATAATTCTCACGAAAATAAGTTTCTAATTCAAAAACAAAAAGT-TGTTTACAAAATGACAA
1 ACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGT-TTTACAAAATGACAA
* * * * *
497 ACTAATTGGACTAAACGATGCAATTTCTCGAGCATGGAATGTTCAGAAAATTGCCCGAAGGAATG
65 AC-AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-GAAAATTTCTCGAAGGAATG
* ** * *
562 GATCGTCTTGAATACTTTAAGGAACCTATGTTATTCAAGAACTCATAAAACTTTGACAAGTTCGG
128 GATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
*
627 AAGTTCAACCAAGGACC-ATGAG
193 AAGTTCGACCAAGGACCAAT-AG
* * ** * *
649 GCAAACAATTCCCACGTAAATAAGTATTTAATTCAAAGACAAAAAGT-TGTTTACAAAATGAGAA
1 ACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGT-TTTACAAAATGACAA
* * * * ** * * * *
713 ACTACTTAGACCAAATGATGTGATTTTTCGAGCATGGAATGTTCGGGTAATTCCTCAAAGTAAGG
65 AC-AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-GAAAATTTCTCGAAGGAATG
* * * * *
778 GATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAGTCGTAAAAGTTTGACAAGATCAG
128 GATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
*
843 AAGTTTGACCAAGGACCAATAG
193 AAGTTCGACCAAGGACCAATAG
*
865 ACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGATAAAAAGTGTTTTACAAAATGACAAA
1 ACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAA
* * * * * * *
930 CTATTTTGACCAAATGTTACGATTTCCCGAGAATGGAATGTTCGGAAAATTTCTCGAAGGAATGC
66 C-AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-GAAAATTTCTCGAAGGAATGG
* * * *
995 ATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAACAACTCGTAAAAGTTTTACCAGTTCGGA
129 ATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * * *
1060 TGTTCGTCCAAGAACCAAGAG
194 AGTTCGACCAAGGACCAATAG
* * *
1081 ACAGACAATTCTCACCTAAATAAGATTTTAATTCAAAGAC-AAAAGT-TGTTTACAAAATGACAA
1 ACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGT-TTTACAAAATGACAA
* * ** * *
1144 ATTAATTGGACCAAATGAGGCGATTTCTCGAGTGTGGAATGTTTAGAAAATTGCTCGAAGGAATG
65 A-CAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTCGAAAATTTCTCGAAGGAATG
* * * * ** * * *
1209 GATCATCGTGAGTACTTTAAGGAACCTAGGTTATTCAAGAACTCATAAAACTTTGACAAGTTTGG
128 GATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
1274 AAGTTCGACCAA-GATCC-ATGAG
193 AAGTTCGACCAAGGA-CCAAT-AG
* *
1296 ACAAACAATTCTCA-C---GT--GTTTTTAACTCAAAG------A-----TTACAAAATGACAAA
1 ACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAA
* * **
1344 CTATTGGGACCAATTGATGCGATTTCTCGAGCATGGAATGTTCGAGAAATACCTCGAAGGAATGG
66 CAATT-GGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAATTTCTCGAAGGAATGG
* * * * * ** *
1409 ATAGTCTTGGATACTTTAAGGAATCGAAGTTATAAAAGAACTTGTAAAAGTTTGAGGAGTTCAGA
129 ATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* *
1474 AGTTTGGCCAAGGACCAATAG
194 AGTTCGACCAAGGACCAATAG
*
1495 ACAAACAATTCTCACCAAAATAAG-TTTTAATTCAAAGATAAAAAGTGTTTTACAAAATGACAAA
1 ACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAA
* * ** * * * * * *
1559 CTATTTTGTTCAAAAGATACGATTTCCCGAGAATGGAATGTTCGGAAAATTTCTGGAAGGAATGC
66 C-AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-GAAAATTTCTCGAAGGAATGG
* * * *
1624 ATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAATGAACTCGTAAAAGTTTTACCAGTTCGGA
129 ATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * * * *
1689 TGTTCGTCCAAGAATCAAGAG
194 AGTTCGACCAAGGACCAATAG
*
1710 ACAAACAATTCTCACCTAAATAAG-TTTTAATTCAAAGACAAAAAGT-TCTTTACAAAATGACAA
1 ACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGT-TTTACAAAATGACAA
* * * * ** * *
1773 ACTAATTAGTCCAAATGATTCGATTTCTCGAGCTTTAAATTTTCGAAAAATTGCTCGAAGGAATG
65 AC-AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCG-AAAATTTCTCGAAGGAATG
* * * * **
1838 GATCGTCTTCAATACCTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCAT
128 GATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
* * * *
1903 ATGTAC-ATCCAAGAACCAAGAG
193 AAGTTCGA-CCAAGGACCAATAG
* * *
1925 ACAAACAATTCTCACAAAAATAAGATTTTAATTCAAAGACAAAAAAGT-TGTTTACAAAATGACC
1 ACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC-AAAAAGTGT-TTTACAAAATGACA
* * * * * *
1989 AACTAATTGGACCAAATGATGCGATTTTTGGAGCACGAAATGTTCGGGAAA-TTCATCAAAGGAA
64 AAC-AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-GAAAATTTC-TCGAAGGAA
* * * * *
2053 TGGATCGTCTTGAATACTTTAAGGAATCGAAGTTGTAAAAGAACTCATACAAGTTTGACAAGTTC
126 TGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
*
2118 GGAAGTTCGACCACGGACCAATAG
191 GGAAGTTCGACCAAGGACCAATAG
*
2142 ACAAACAATTCTCACCAAAATAAGTTTTCAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAA
1 ACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAA
* * * * *
2207 CTATTTGGACCAAATGATGCGATTTCCCGAGAAT-G--TCGTTCGAAAAATTTCCCAAAGGAATG
66 C-AATTGGACCAAATGATGCGATTTCTCGAGCATGGAAT-GTTCG-AAAATTTCTCGAAGGAATG
* ** * * *
2269 CATTATTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCGG
128 GATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
* * *
2334 ATGTTCGTCCAAGAACCGAA-AG
193 AAGTTCGACCAAGGACC-AATAG
* * * *
2356 ACAAACTATTCTCATCACAATAAGTTTTTAATTCAAATACAAAAAGT-TGTTTACAAAATGACAA
1 ACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGT-TTTACAAAATGACAA
* * * * *
2420 ACTAATTGGACCAAATGATGTGATTTCTTGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAGTG
65 AC-AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCG-AAAATTTCTCGAAGGAATG
* *
2485 GATCGTCTTGAA-AGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTCGACAAGTTC-
128 GATCGTCTTGAATA-CTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * *
2548 AAATATTAGGA-TAAGGACCAATAG
192 GAA-GTT-CGACCAAGGACCAATAG
* * *
2572 ACAAAAAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTATTTTACAAAACGACAAA
1 ACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAA
* * * *** * ** * *
2637 CTATTTTGACCAAATGTTTTAATTTCCCGATAATGGAATATTCGAAAATTTTCTCGAAGGAATGC
66 C-AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAA-TTTCTCGAAGGAATGG
* * * * *
2702 ATGGTTTTGAATA-TTGTAAGGAACCTAATTTATAAAAGAAGTCGTGAAAG
129 ATCGTCTTGAATACTT-TAAGGAACCTAAGTTATAAAAGAACTCGTAAAAG
Statistics
Matches: 2109, Mismatches: 365, Indels: 122
0.81 0.14 0.05
Matches are distributed among these distances:
198 7 0.00
199 137 0.06
200 5 0.00
203 1 0.00
204 13 0.01
205 1 0.00
209 13 0.01
210 1 0.00
211 1 0.00
213 3 0.00
214 179 0.08
215 507 0.24
216 1052 0.50
217 187 0.09
218 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (214 bp):
ACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTGTTTTACAAAATGACAAA
CAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAATTTCTCGAAGGAATGGAT
CGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
TTCGACCAAGGACCAATAG
Found at i:2387 original size:647 final size:646
Alignment explanation
Indices: 1--2751 Score: 3592
Period size: 647 Copynumber: 4.3 Consensus size: 646
* * * *
1 ACAAACTATTCTCATCACAATAAGTTTTTAATTCAAATACAAAAAGCTGTTTACAAAATGACAAA
1 ACAAACAATTCTCA-CAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAA
* * *
66 CTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTTCTCGAAA-GAGTG
65 CTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAGAAATTCCTC-AAAGGAATG
*
130 AATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG
129 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG
*
195 AAGTTCGACCAAGGACCAATAGACAAACAATTCTTACCAAAATAAGTTTTTAATTCAAAGATAAA
194 AAGTTCGACCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGATAAA
* * *
260 AACTGTTTTACAAAATGACAAACAATTTTGACCAAATGATACGATTTCCCTAGAATGGAATGTTC
259 AAGTGTTTTACAAAATGACAAACTATTTTGACCAAATGATACGATTTCCCGAGAATGG-ATGTTC
325 -AGAAAATTTCTCGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACT
323 GA-AAAATTTCTCGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACT
* **
389 CGTAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAATAATTCTCACGAAAAT
387 CGTAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCTAAAT
* * * * *
454 AAGTTTCTAATTCAAAAACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACTAAACGATGCA
452 AAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCG
*
519 ATTTCTCGAGCATGGAATGTTC-AGAAAATTGCCCGAAGGAATGGATCGTCTTGAATACTTTAAG
517 ATTTCTCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* ** * * * * *
583 GAACCTATGTTATTCAAGAACTCATAAAACTTTGACAAGTTCGGAAGTTCAACCAAGGACCATGA
581 GAACCTAAGTTATAAAAGAACTCATAAAACTTTGACAAGTTCAGAAGTACATCCAAGAACCAAGA
648 G
646 G
* * * * *
649 GCAAACAATTCCCACGTAAATAAGTATTTAATTCAAAGACAAAAAGTTGTTTACAAAATGAGAAA
1 ACAAACAATTCTCAC-AAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAA
* * * * * * * *
714 CTACTTAGACCAAATGATGTGATTTTTCGAGCATGGAATGTTCGGGTAATTCCTCAAAGTAAGGG
65 CTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAGAAATTCCTCAAAGGAATGG
* * *
779 ATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAGTCGTAAAAGTTTGACAAGATCAGA
130 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGA
*
844 AGTTTGACCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGATAAAA
195 AGTTCGACCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGATAAAA
*
909 AGTGTTTTACAAAATGACAAACTATTTTGACCAAATGTTACGATTTCCCGAGAATGGAATGTTCG
260 AGTGTTTTACAAAATGACAAACTATTTTGACCAAATGATACGATTTCCCGAGAATGG-ATGTTCG
* *
974 GAAAATTTCTCGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAACAACTCG
324 AAAAATTTCTCGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCG
*
1039 TAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACCAAGAGACAGACAATTCTCACCTAAATAA
389 TAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCTAAATAA
* * *
1104 GATTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATGACAAATTAATTGGACCAAATGAGGCGAT
454 GTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGAT
** * * * *
1168 TTCTCGAGTGTGGAATGTT-TAGAAAATTGCTCGAAGGAATGGATCATCGTGAGTACTTTAAGGA
519 TTCTCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* ** ** * * *
1232 ACCTAGGTTATTCAAGAACTCATAAAACTTTGACAAGTTTGGAAGTTCGA-CCAAGATCCATGAG
583 ACCTAAGTTATAAAAGAACTCATAAAACTTTGACAAGTTCAGAAGTAC-ATCCAAGAACCAAGAG
* *
1296 ACAAACAATTCTCAC---GT--GTTTTTAACTCAAAG------A-----TTACAAAATGACAAAC
1 ACAAACAATTCTCACAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAAC
* * *
1345 T-ATTGGGACCAATTGATGCGATTTCTCGAGCATGGAATGTTCGAGAAATACCTCGAAGGAATGG
66 TAATT-GGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAGAAATTCCTCAAAGGAATGG
* * * * **
1409 ATAGTCTTGGATACTTTAAGGAATCGAAGTTATAAAAGAACTTGTAAAAGTTTGAGGAGTTCAGA
130 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGA
* *
1474 AGTTTGGCCAAGGACCAATAGACAAACAATTCTCACCAAAATAAG-TTTTAATTCAAAGATAAAA
195 AGTTCGACCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGATAAAA
** *
1538 AGTGTTTTACAAAATGACAAACTATTTTGTTCAAAAGATACGATTTCCCGAGAATGGAATGTTCG
260 AGTGTTTTACAAAATGACAAACTATTTTGACCAAATGATACGATTTCCCGAGAATGG-ATGTTCG
* * *
1603 GAAAATTTCTGGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAATGAACTCG
324 AAAAATTTCTCGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCG
*
1668 TAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAATCAAGAGACAAACAATTCTCACCTAAATAA
389 TAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCTAAATAA
* * * *
1733 G-TTTTAATTCAAAGACAAAAAGTTCTTTACAAAATGACAAACTAATTAGTCCAAATGATTCGAT
454 GTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGAT
* ** * * *
1797 TTCTCGAGCTTTAAATTTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTCAATACCTTAAGGAA
519 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
1862 CCTAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCATATGTACATCCAAGAACCAAGAG
584 CCTAAGTTATAAAAGAACTCATAAAACTTTGACAAGTTCAGAAGTACATCCAAGAACCAAGAG
* *
1925 ACAAACAATTCTCACAAAAATAAGATTTTAATTCAAAGACAAAAAAGTTGTTTACAAAATGACCA
1 ACAAACAATTCTCAC-AAAATAAGTTTTTAATTCAAAGAC-AAAAAGTTGTTTACAAAATGACAA
* * * * * *
1990 ACTAATTGGACCAAATGATGCGATTTTTGGAGCACGAAATGTTCGGGAAATTCATCAAAGGAATG
64 ACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAGAAATTCCTCAAAGGAATG
* * * * *
2055 GATCGTCTTGAATACTTTAAGGAATCGAAGTTGTAAAAGAACTCATACAAGTTTGACAAGTTCGG
129 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG
* * *
2120 AAGTTCGACCACGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTCAATTCAAAGACAAA
194 AAGTTCGACCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGATAAA
* *
2185 AAGTGTTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGAAT-G-TCGTTC
259 AAGTGTTTTACAAAATGACAAACTATTTTGACCAAATGATACGATTTCCCGAGAATGGAT-GTTC
* * **
2248 GAAAAATTTCCCAAAGGAATGCATTATTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTC
323 GAAAAATTTCTCGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTC
* *
2313 GTAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACCGAA-AGACAAACTATTCTCATC-ACAA
388 GTAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACC-AAGAGACAAACAATTCTCACCTA-AA
* *
2376 TAAGTTTTTAATTCAAATACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGT
451 TAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGC
* * *
2441 GATTTCTTGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAGTGGATCGTCTTGAA-AGCTTTAA
516 GATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATA-CTTTAA
* * * * * * * *
2505 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTCGACAAGTTCAAATATTAGGAT--AAGGACCA
580 GGAACCTAAGTTATAAAAGAACTCATAAAACTTTGACAAGTTCAGA-AGTA-CATCCAAGAACCA
*
2568 ATAG
643 AGAG
* *
2572 ACAAAAAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAGTAT-TTTACAAAACGACAA
1 ACAAACAATTCTCA-CAAAATAAGTTTTTAATTCAAAGACAAAAAGT-TGTTTACAAAATGACAA
* * * *** * ** * * *
2636 ACTATTTTGACCAAATGTTTTAATTTCCCGATAATGGAATATTCGA-AAATTTTCTCGAAGGAAT
64 ACTAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAGAAA-TTCCTCAAAGGAAT
* * * * * * *
2700 GCATGGTTTTGAATA-TTGTAAGGAACCTAATTTATAAAAGAAGTCGTGAAAG
128 GGATCGTCTTGAATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
Statistics
Matches: 1842, Mismatches: 221, Indels: 82
0.86 0.10 0.04
Matches are distributed among these distances:
628 16 0.01
629 363 0.20
630 166 0.09
633 1 0.00
635 14 0.01
641 13 0.01
642 1 0.00
643 1 0.00
645 7 0.00
646 222 0.12
647 536 0.29
648 500 0.27
649 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (646 bp):
ACAAACAATTCTCACAAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAAC
TAATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAGAAATTCCTCAAAGGAATGGA
TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAA
GTTCGACCAAGGACCAATAGACAAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGATAAAAA
GTGTTTTACAAAATGACAAACTATTTTGACCAAATGATACGATTTCCCGAGAATGGATGTTCGAA
AAATTTCTCGAAGGAATGCATCGTTTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTA
AAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACCAAGAGACAAACAATTCTCACCTAAATAAGT
TTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTAATTGGACCAAATGATGCGATTT
CTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
TAAGTTATAAAAGAACTCATAAAACTTTGACAAGTTCAGAAGTACATCCAAGAACCAAGAG
Done.