genome.fa.s2923.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002923.1 Kokia drynarioides strain JFW-HI SEQ_115365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91125

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6424--6473	18	2.6	19	81	12	57	72	4	6	18	1.22
16094--16127	2	17.0	2	100	0	68	50	0	0	50	1.00
21366--21452	39	2.2	39	89	0	129	24	25	35	14	1.94
23727--23769	18	2.4	18	80	3	52	0	25	2	72	0.97
36055--36087	14	2.4	14	100	0	66	12	6	9	72	1.26
48636--48697	31	2.0	31	100	0	124	29	29	16	25	1.96
48640--48731	26	3.3	26	83	7	94	29	25	18	27	1.98
57736--57773	17	2.2	18	85	4	51	26	18	2	52	1.58
58801--58880	26	3.1	26	76	7	81	27	21	21	30	1.98
66387--66498	16	5.8	20	64	24	62	45	0	0	53	1.06
66444--66504	26	2.3	27	78	15	74	47	1	0	50	1.10
66533--66562	6	5.0	6	91	0	51	0	63	0	36	0.95
67670--67735	28	2.3	30	89	10	111	48	0	0	51	1.00
72076--72210	26	5.0	26	68	18	87	45	0	2	51	1.18
72080--72210	52	2.4	57	83	8	164	45	0	2	51	1.19
72080--72162	15	5.7	14	68	20	55	46	1	2	49	1.22
74100--74157	5	11.4	5	77	17	57	17	0	3	79	0.87
74100--74156	9	6.2	9	80	10	62	17	0	3	78	0.88
74120--74170	25	2.0	25	85	7	68	19	1	1	76	0.98
76101--76384	96	3.0	96	96	2	513	35	28	9	26	1.88
76867--76984	59	2.0	59	100	0	236	37	27	8	27	1.85
81259--81329	35	2.0	35	89	5	108	28	12	12	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86723--86781	24	2.5	24	88	0	82	30	32	20	16	1.95
86924--86983	24	2.5	24	91	0	102	33	35	16	15	1.90
86676--87499	201	4.1	201	93	0	1355	31	28	22	18	1.97
87125--87184	24	2.5	24	88	0	93	33	33	16	16	1.92
87326--87385	24	2.5	24	88	0	93	35	33	16	15	1.90
88875--88921	23	2.0	23	84	12	60	44	0	2	53	1.12
88953--88986	18	1.9	18	88	5	52	55	5	2	35	1.39
89474--89823	177	2.0	177	90	0	549	42	3	9	45	1.51

Tables:   1

The End!