Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002926.1 Kokia drynarioides strain JFW-HI SEQ_115370, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1893
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.37


Found at i:1183 original size:15 final size:15

Alignment explanation


    Indices: 1133--1190  Score: 64
    Period size: 15  Copynumber: 3.8  Consensus size: 15

       1123 ATTTAATTAT

                             
       1133 TTAATTTTGAT-TTATA
          1 TTAATTTT-ATATT-TA

                   *       
       1149 TTAATTTAATATTTA
          1 TTAATTTTATATTTA

            *             *
       1164 ATAATTTTATATTTT
          1 TTAATTTTATATTTA

                        
       1179 TTAATTTTATAT
          1 TTAATTTTATAT

       1191 AGAGTCATCT


Statistics
Matches: 36,  Mismatches: 5, Indels: 3
        0.82            0.11        0.07

Matches are distributed among these distances:
  15   27  0.75
  16    9  0.25

ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64


Consensus pattern (15 bp):   
TTAATTTTATATTTA
Done.