Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002945.1 Kokia drynarioides strain JFW-HI SEQ_115393, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3127
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29


Found at i:200 original size:15 final size:15

Alignment explanation


    Indices: 150--201  Score: 50
    Period size: 15  Copynumber: 3.5  Consensus size: 15

        140 GCGAGCATTG

                     *     
        150 GTGTTGCAAGCACTC
          1 GTGTTGCAAACACTC

            *     **      *
        165 ATGTTGTGAACACTA
          1 GTGTTGCAAACACTC

             *             
        180 GAGTTGCAAACACTC
          1 GTGTTGCAAACACTC

                   
        195 GTGTTGC
          1 GTGTTGC

        202 GAGCATGGAT


Statistics
Matches: 26,  Mismatches: 11, Indels: 0
        0.70            0.30        0.00

Matches are distributed among these distances:
  15   26  1.00

ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29


Consensus pattern (15 bp):   
GTGTTGCAAACACTC
Done.