Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002948.1 Kokia drynarioides strain JFW-HI SEQ_115408, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6966
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1354 original size:70 final size:71

Alignment explanation


    Indices: 1240--1383  Score: 202
    Period size: 70  Copynumber: 2.0  Consensus size: 71

       1230 ACATTAAATA

                                                          *     *            
       1240 CATTAAATAATTTGAAAAAGTAAAAACTTGTAAATTCAATAACTCCTAATAGTTAACCCACCTAT
          1 CATTAAATAATTTGAAAAAGTAAAAACTTGTAAATTCAATAACTCCCAATAGCTAACCCACCTAT

               *  
       1305 ATCGTT
         66 ATCATT

                                 *       *                           *      *
       1311 CATTAAATAATTTG-AAAAGTGAAAA-TTTTCAAATTCAATAACTCCCAATAGCTAATCCACCTC
          1 CATTAAATAATTTGAAAAAGTAAAAACTTGT-AAATTCAATAACTCCCAATAGCTAACCCACCTA

                   
       1374 TATCATT
         65 TATCATT

               
       1381 CAT
          1 CAT

       1384 CACTGTTATT


Statistics
Matches: 65,  Mismatches: 7, Indels: 3
        0.87            0.09        0.04

Matches are distributed among these distances:
  69    3  0.05
  70   48  0.74
  71   14  0.22

ACGTcount: A:0.42, C:0.19, G:0.06, T:0.33


Consensus pattern (71 bp):   
CATTAAATAATTTGAAAAAGTAAAAACTTGTAAATTCAATAACTCCCAATAGCTAACCCACCTAT
ATCATT
Done.