Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002951.1 Kokia drynarioides strain JFW-HI SEQ_115416, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6486
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.37


Found at i:2168 original size:18 final size:18

Alignment explanation


    Indices: 2145--2190  Score: 51
    Period size: 16  Copynumber: 2.6  Consensus size: 18

       2135 TAATTAATTG

                              
       2145 TTATAAAAATTAAATATA
          1 TTATAAAAATTAAATATA

                       *     *
       2163 TTAT--AAATTTAATATT
          1 TTATAAAAATTAAATATA

                        
       2179 TATATAAAAATT
          1 T-TATAAAAATT

       2191 TTAAAAGATG


Statistics
Matches: 23,  Mismatches: 2, Indels: 5
        0.77            0.07        0.17

Matches are distributed among these distances:
  16   11  0.48
  17    3  0.13
  18    4  0.17
  19    5  0.22

ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46


Consensus pattern (18 bp):   
TTATAAAAATTAAATATA

Done.