Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002953.1 Kokia drynarioides strain JFW-HI SEQ_115418, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1930
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.37


Found at i:1480 original size:18 final size:18

Alignment explanation


    Indices: 1446--1480  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       1436 AACAAGACAA

                     *  *     
       1446 AATAAAATTTATTTTAAC
          1 AATAAAATTAATATTAAC

                             
       1464 AATAAAATTAATATTAA
          1 AATAAAATTAATATTAA

       1481 TACATTCTTA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40


Consensus pattern (18 bp):   
AATAAAATTAATATTAAC
Done.