Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000296.1 Kokia drynarioides strain JFW-HI SEQ_111049, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22032
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34


Found at i:677 original size:13 final size:14

Alignment explanation


    Indices: 653--681  Score: 51
    Period size: 13  Copynumber: 2.1  Consensus size: 14

        643 AATAACCCAA

                          
        653 AAAAATTAATATTT
          1 AAAAATTAATATTT

                          
        667 AAAAATT-ATATTT
          1 AAAAATTAATATTT

              
        680 AA
          1 AA

        682 TATAATAAAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    8  0.53
  14    7  0.47

ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41


Consensus pattern (14 bp):   
AAAAATTAATATTT

Found at i:12704 original size:21 final size:22

Alignment explanation


    Indices: 12649--12704  Score: 57
    Period size: 21  Copynumber: 2.6  Consensus size: 22

      12639 CAGTACGAAG

                                 * 
      12649 TATTTAATTTTATTTTTATCCCA
          1 TATTTAATTTTATTTTTAT-CAA

                                   
      12672 TATTATAA---TATTTTTAT-AA
          1 TATT-TAATTTTATTTTTATCAA

                          
      12691 TATTTAATTTTATT
          1 TATTTAATTTTATT

      12705 ATCATTGTTA


Statistics
Matches: 28,  Mismatches: 1, Indels: 10
        0.72            0.03        0.26

Matches are distributed among these distances:
  18    3  0.11
  19    5  0.18
  21   13  0.46
  23    4  0.14
  24    3  0.11

ACGTcount: A:0.32, C:0.05, G:0.00, T:0.62


Consensus pattern (22 bp):   
TATTTAATTTTATTTTTATCAA
Done.