Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000297.1 Kokia drynarioides strain JFW-HI SEQ_111051, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6902
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35


Found at i:4564 original size:20 final size:21

Alignment explanation


    Indices: 4541--4579  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       4531 TAAATTTAAA

                                 
       4541 TTTAACC-TAAAATATTTATT
          1 TTTAACCATAAAATATTTATT

                *       *      
       4561 TTTACCCATAAATTATTTA
          1 TTTAACCATAAAATATTTA

       4580 AAACCACAAA


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20    6  0.38
  21   10  0.62

ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49


Consensus pattern (21 bp):   
TTTAACCATAAAATATTTATT
Done.