Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01002971.1 Kokia drynarioides strain JFW-HI SEQ_115450, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4604
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Found at i:1382 original size:348 final size:348
Alignment explanation
Indices: 74--4604 Score: 6496
Period size: 348 Copynumber: 13.0 Consensus size: 348
64 AGGGCTCCAA
* * *
74 CTAATAATGTCAATGTATCCCATGATGCTTTACTATTTCGCAAAATTGTAAACTTACGATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
* *
139 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACGCGAGGACTT-TTCAGGAGGTCA
66 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCT-AGGAGGTCA
* * *
203 CCCATCCTAGTACTACTCACGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGA-GTA
130 CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC-GATGCA
* * * *
267 TTAGTGCAGGAATGATCTCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTTTCA
194 TTAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCA
* * *
332 TCGCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCACGGGAAGACTTATTTTCG
259 TCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCG
*
397 CGGATAAAAATAAAATAAATACACG
324 CGGATAAAAATAAAATAAAAACACG
* * *
422 CTAATAATGTCCATGTATCCCATGAAGGTTTACTATTTCGTAAAATTGAAAACTTACGATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
* * *
487 AAATAATACAAAAAGAAAAAAAAAACAAAAATAGGGGTGCAACACGAGGATTTCCCAGGAGGTCA
66 AAATAATACAAAAAG-AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCA
* * * * *
552 CCCATCCTAGTGCCACTATCGCCCGAGCACGCTTAACTGCAGCA-TTCTGATGGGATCCGATGCA
130 CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGC-GGAGTTCTGATGGGATCCGATGCA
*
616 TTAGTGCTAGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCA
194 TTAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCA
* * * * *
681 TCCCATTCATGCCTTGAATTTGAATGTAAGTATAACCAAATAATGCTCGGGAAGACGTATTTTCA
259 TCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCG
* * *
746 CGAATAAAAATACAATAAAAGCACG
324 CGGATAAAAATAAAATAAAAACACG
* * * *
771 CTAATAATGTTCATGTATCCCATGAAGCATTACTATTTTGCAAAATTGCAAACTTACTATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
* *
836 AAATAATACAAAAAG-AAAATAAAGAAAAAGAGGGGTGCAACACGAGGACTTCCCT-GGAGGTCA
66 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTT-CCTAGGAGGTCA
* *
899 CCTATCCTAGTACTACTCTCGCCCAAGCACTCTTAACTGCGGAGTTCTGATGGGATCC-AGTGCA
130 CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGA-TGCA
* * * *
963 TTAGTGCTGGTATGATCGCTCCCATTATGTTCTGCGTAATCTATTTACATTAAGGCTACCTTTCA
194 TTAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCA
* * *
1028 TCCCATTCGTGCCTCAAATTTGAATGTAAATATACCTAAATAATGCTCGGGAAGACGTTTTTTCG
259 TCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCG
1093 CGGATAAAAATAAAATAAAAACACG
324 CGGATAAAAATAAAATAAAAACACG
* * *
1118 CTAATAATGTCCATGTATCCCATTAAGCTTTACTATATCACAAAATTGCAAACTTACGATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
* * * *
1183 AAATAATACAAAAAGAATAAAAAACAAAAAGAAGGGTGCTACACGAGGACATCCTAGGAGGTCAC
66 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCAC
* * * * *
1248 CCATCCTAGTGCTACTCTCGCCCAAGCACGCTTAGCTACAGAGTTCTGATGGGATTCGATGCATT
131 CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGATGCATT
* * * * *
1313 AGTGCTAGTATGATCTCTCCCATTATGTTCTGCGCAATCTGTTTACATAAAGGCTACCTTTCATC
196 AGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCATC
* * *
1378 CCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACTTATTTTTGTG
261 CCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCG
1443 GATAAAAATAAAATAAAAACACG
326 GATAAAAATAAAATAAAAACACG
* *
1466 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGTAAAACTGCAAACTTACGATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
* * * *
1531 AAATAATACAAAAA-AAAATAAAACAAAAAGAAGGGTGCAACACGAGGACTTCCCAAGAGGTCAC
66 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCAC
* * * * * * *
1595 CCATCCCAATACAACTCTCGCCCAAGCACGCTTAGCTACGAAGTTCTGATGGGATCCGGTGCATT
131 CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGATGCATT
* * *
1660 AGTACTGGTCTGATCGCACCCATTATGTTTTACGCAATCTATTTACATAAAGGCTACCTTTCATC
196 AGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCATC
* * * * * *
1725 CCATTTGTGCATCGAATTTGAACGTAAATATACCC-AATAAAGCTCGAGAAGACGTATTTTCGCA
261 CCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCG
*
1789 AATAAAAATAAAATAAAAACACG
326 GATAAAAATAAAATAAAAACACG
* * *
1812 CTAATAATGTCAATGTATCCCATGATGCTTTACTATTTCGTAAAATTGCAAACTTACGATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
* * *
1877 AAATAATACAAAAAG-AAAAAAAACATAAAGAGGGGTGCAACACCAGGACATCCTAGGAGGTCAC
66 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCAC
* *
1941 CCATCCTAGTACTACTCACGCCCAAGCACGCTTAACTGCGGAGTTTTGAAT-GGATCCGATGCAT
131 CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTG-ATGGGATCCGATGCAT
* * * *
2005 TAGTGTTGGTATGATCACACCCATTATGTTTTGCGCAATCAATTTACATAAAGGGTACCTTTCAT
195 TAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCAT
* * * * * * *
2070 CTCATTCATGCCTCGAATTTGAATGTAACTATACCCAAATAATGCTCAGAAAGACATATTATCGC
260 CCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGC
2135 GGATAAAAATAAAATAAAAACACG
325 GGATAAAAATAAAATAAAAACACG
* * * * *
2159 ATAATAATGTCTATGTATCCTATGAAGCTTTACTATTTCGTAAAATTACAAACTTACGATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
*
2224 AAATAATAC-AAAAGAAAAAATAAACAAAAAGAAGGGTGCAACACGAGGACTT-CTAGGAGGTCA
66 AAATAATACAAAAAGAAAAAA-AAACAAAAAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCA
* * * * * * * * *
2287 CCCATCCCAATACAACTCTCACCCAAGCACACTTAGCTACGAAGTTCTGATGGGATCCGGTGCAT
130 CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGATGCAT
* * * *
2352 TATTACTGGTCTGATCGCACCCATTATGTTTTACGCAATCTATTTACATAAAGGCTACCTTTCAT
195 TAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCAT
* * * * *
2417 CCTATTCGTGCCTAGAATTTTGAATGTAAGTATACCCAAATAATGCTCGAGAAGATGTATTTTCG
260 CCCATTCGTGCCTCGAA-TTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCG
* *
2482 CGAATAAAAATAAAACAAAAACACG
324 CGGATAAAAATAAAATAAAAACACG
* *
2507 CTAATAATGTCAATGTATCCCATGATGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
* *
2572 AAATAATACAAGAAGAAAAAAAAAAACCAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGT
66 AAATAATACAA-AA-AGAAAAAAAAA-CAAAAAGAGGGGTGCAACACGAGGACTTCCTAGGAGGT
* * *
2637 CACCCATCCTAGTACTACTCTCGCCCATGCACACTTAACGGCGGAGTTCTGATGGGATCCGATGC
128 CACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGATGC
* * * * **
2702 ATCAGTGTTGGTATGATTGCACCCATTATGTTCTAAGCAATCTATTTACATAAAGGCTACCTTTC
193 ATTAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTC
* * *
2767 ATCCCATTCGTGTCTCGAATTTGAATATAAATGTACCCAAATAATGCTCGGGAAGACGTATTTTC
258 ATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTC
* *
2832 GCGGATAAAAATAAAATAGAAACATG
323 GCGGATAAAAATAAAATAAAAACACG
* * *
2858 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGTAAAATTGCAAACTTAAGAGAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
* * * * *
2923 AAATAATGCAAAAAGAAAAAAAAATAAAAATAGGGGTGCAACACGAGGACTTCCCAAGAGGTCAC
66 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCAC
* * * * * * *
2988 CCATCCTA-AAGCTACTCTCACCCAAGCACGCTTAACTACAGTGTTCTGATGGGATTCAATGCAT
131 CCATCCTAGTA-CTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGATGCAT
* *
3052 TAGTGCTGGTATGATCGCACCGATTATATTTTGCGCAATCTATTTACATAAAGGCTACCTTTCAT
195 TAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCAT
* * * * *
3117 CCCATTTGTGCCTTGAATTTGAATGTAAGTATAACCAAATAATGATCGGGAAGACGTATTTTCGC
260 CCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGC
* *
3182 GAATAAAAATAAAATAGAAACACG
325 GGATAAAAATAAAATAAAAACACG
* * * * *
3206 TTAATAATGTCCATGTATCCCATAAAGCATTACTATTTCACAAAATTGCAAACTTACTATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
* * * *
3271 AAATAATACAAAAAG-AAAATAAAGAAAAAGAGGGGTGCAACACGTGGACTTCCTAGCAGGTCAC
66 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCAC
* *
3335 CCATCCTAGTACTACTCTCGCCCAAGCACTCTTAATTGCGGAGTTCTGATGGGATCC-AGTGCAT
131 CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGA-TGCAT
* *
3399 TAGTGCTGGTATGATCGCTCCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTTTCAT
195 TAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCAT
*
3464 CCCATTCGTGCCTCGAATTTGAATGTAAATATACCTAAATAATGCTCGGGAAGACGTATTTTCGC
260 CCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGC
*
3529 GGATAAAAAGAAAATAAAAACACG
325 GGATAAAAATAAAATAAAAACACG
* * *
3553 CTAATAATGTCTATATA-CCCTATGAAGCTTTACTATTTCGCAAAATTACAAACTTACGATAAAT
1 CTAATAATGTCCATGTATCCC-ATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAAT
* *
3617 AAAATAATAC-AAAAGAAAAAAAAAACAAAAAAAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
65 AAAATAATACAAAAAG-AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTC
* * * * * *
3681 AACCAACCTAGTACTACTCACGCCTAAGCACGCTTAACTGCGGAGTTTTGAAT-GGATCCGTTGC
129 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTG-ATGGGATCCGATGC
*
3745 ATTAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTTTTTACATAAAGGCTACCTTTC
193 ATTAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTC
* * * *
3810 ATCCCATTCGTGCCTCGAATTTGAATGGAAGTATACCCAAATAATGCTCGGGAACACGTATTTTG
258 ATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTC
* *
3875 GTGGATAAAAATAAAATAAAAAAGACG
323 GCGGATAAAAATAAAAT-AAAAACACG
* * *
3902 CTAATAATTTCCATGTATCCCAT-AAGCGTTACTATTTCGCAAAATTGCAAACTTATGATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
*
3966 AAATAGTAC-AAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTTCC-AGGAGGTCA
66 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGAC-TTCCTAGGAGGTCA
* * * *
4029 CCCATCCTGGTACTACTCCCGCCCAAGCACGCTTAACTACGGAGTTCTGATGGGATCCGGTGCAT
130 CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGATGCAT
* *
4094 TAGTGCTGGTATGATCGCACCAATTATGTTTTACGCAATCTATTTACATAAAGGCTACCTTTCAT
195 TAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCAT
* * * * *
4159 CCCATTCATGCCTCGAATTTGAATGTAAGTATACCCGAATAATGCTCGAGAAGACGTATTTTCGT
260 CCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGC
*
4224 GGATAAAAATAAAATAAAAACACA
325 GGATAAAAATAAAATAAAAACACG
* * *
4248 CTAATAATGTCAATGTATCCCATGAAGCTTTATTATTTCGCAAAATTGCAAACTTATGATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
*
4313 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCAAGGAGGTCAC
66 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCAC
* * *
4378 CCATCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGTTGGGATCC-AGTCCAT
131 CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGA-TGCAT
* * * * * * *
4442 TACTGTTGGAATGATCGCACCCATTATGTTATGTGCAATCTATTTACATAAACGCTAGCTTTCAT
195 TAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCAT
* * * *
4507 CCCATTCGTGCCTTGAATTTGAATGGAAGTATACCCAAATAATGCTCGGGAAGACGTATTTTCGT
260 CCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGC
4572 GGATAAAAATAAAATAAAAACACG
325 GGATAAAAATAAAATAAAAACACG
4596 CTAATAATG
1 CTAATAATG
Statistics
Matches: 3725, Mismatches: 420, Indels: 76
0.88 0.10 0.02
Matches are distributed among these distances:
346 352 0.09
347 1331 0.36
348 1385 0.37
349 342 0.09
350 12 0.00
351 167 0.04
352 136 0.04
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (348 bp):
CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCAC
CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGATGCATT
AGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCATC
CCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCG
GATAAAAATAAAATAAAAACACG
Found at i:1550 original size:15 final size:15
Alignment explanation
Indices: 1530--1559 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1520 TACGATAAAT
*
1530 AAAATAATACAAAAA
1 AAAATAAAACAAAAA
1545 AAAATAAAACAAAAA
1 AAAATAAAACAAAAA
1560 GAAGGGTGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.07, G:0.00, T:0.10
Consensus pattern (15 bp):
AAAATAAAACAAAAA
Found at i:1572 original size:695 final size:696
Alignment explanation
Indices: 74--4604 Score: 6560
Period size: 695 Copynumber: 6.5 Consensus size: 696
64 AGGGCTCCAA
* * *
74 CTAATAATGTCAATGTATCCCATGATGCTTTACTATTTCGCAAAATTGTAAACTTACGATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
* **
139 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACGCGAGGACTTTTCAGGAGGTCAC
66 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC
* * * *
204 CCATCCTAGTACTACTCACGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGAGTATT
131 CCATCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCAGTGCATT
* * * *
269 AGTGCAGGAATGATCTCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATC
196 AGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCATC
* * * *
334 GCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCACGGGAAGACTTATTTTCGCG
261 CCATTCGTGCCTCGAATTTGAATGTAAGTATACCCAAATAATGCTCGGGAAGACGTATTTTCGCG
* * *
399 GATAAAAATAAAATAAATACACGCTAATAATGTCCATGTATCCCATGAAGGTTTACTATTTCGTA
326 GATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCA
* *
464 AAATTGAAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAAACAAAAATAGGGGTGCAA
391 AAATTGCAAACTTACGATAAATAAAATAATACAAAAAG-AAAAAAAAACAAAAAGAGGGGTGCAA
* * * * * *
529 CACGAGGATTTCCCAGGAGGTCACCCATCCTAGTGCCACTATCGCCCGAGCACGCTTAACTGCAG
455 CACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGC-G
* * *
594 CA-TTCTGATGGGATCCGATGCATTAGTGCTAGTATGATCGCACCCATTATGTTTTGCGCAATCT
519 GAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATCT
* * *
658 ATTTACATAAAGGCTACCTTTCATCCCATTCATGCCTTGAATTTGAATGTAAGTATAACCAAATA
584 ATTTACATAAAGGCTACCTTTCATCCCATTCATGCCTCGAATTTGAATGTAAATATACCCAAATA
* * * *
723 ATGCTCGGGAAGACGTATTTTCACGAATAAAAATACAATAAAAGCACG
649 ATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACG
* * * *
771 CTAATAATGTTCATGTATCCCATGAAGCATTACTATTTTGCAAAATTGCAAACTTACTATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
* * *
836 AAATAATACAAAAAG-AAAATAAAGAAAAAGAGGGGTGCAACACGAGGACTTCCCTGGAGGTCAC
66 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC
* *
900 CTATCCTAGTACTACTCTCGCCCAAGCACTCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATT
131 CCATCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCAGTGCATT
* * * *
965 AGTGCTGGTATGATCGCTCCCATTATGTTCTGCGTAATCTATTTACATTAAGGCTACCTTTCATC
196 AGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCATC
* * * *
1030 CCATTCGTGCCTCAAATTTGAATGTAAATATACCTAAATAATGCTCGGGAAGACGTTTTTTCGCG
261 CCATTCGTGCCTCGAATTTGAATGTAAGTATACCCAAATAATGCTCGGGAAGACGTATTTTCGCG
* * *
1095 GATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATTAAGCTTTACTATATCACA
326 GATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCA
* * *
1160 AAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAATAAAAAACAAAAAGAAGGGTGCTAC
391 AAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAAC
* * * * *
1225 ACGAGGACATCCTAGGAGGTCACCCATCCTAGTGCTACTCTCGCCCAAGCACGCTTAGCTACAGA
456 ACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGA
* * * * *
1290 GTTCTGATGGGATTCGATGCATTAGTGCTAGTATGATCTCTCCCATTATGTTCTGCGCAATCTGT
521 GTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATCTAT
*
1355 TTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAAT
586 TTACATAAAGGCTACCTTTCATCCCATTCATGCCTCGAATTTGAATGTAAATATACCCAAATAAT
* * *
1420 GCTCGGGAAGACTTATTTTTGTGGATAAAAATAAAATAAAAACACG
651 GCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACG
* *
1466 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGTAAAACTGCAAACTTACGATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
* * *
1531 AAATAATACAAAAA-AAAATAAAACAAAAAGAAGGGTGCAACACGAGGACTTCCCAAGAGGTCAC
66 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC
* * * * * * * *
1595 CCATCCCAATACAACTCTCGCCCAAGCACGCTTAGCTACGAAGTTCTGATGGGATCCGGTGCATT
131 CCATCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCAGTGCATT
* * *
1660 AGTACTGGTCTGATCGCACCCATTATGTTTTACGCAATCTATTTACATAAAGGCTACCTTTCATC
196 AGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCATC
* * * * * * *
1725 CCATTTGTGCATCGAATTTGAACGTAAATATACCC-AATAAAGCTCGAGAAGACGTATTTTCGCA
261 CCATTCGTGCCTCGAATTTGAATGTAAGTATACCCAAATAATGCTCGGGAAGACGTATTTTCGCG
* * * *
1789 AATAAAAATAAAATAAAAACACGCTAATAATGTCAATGTATCCCATGATGCTTTACTATTTCGTA
326 GATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCA
*
1854 AAATTGCAAACTTACGATAAATAAAATAATACAAAAAG-AAAAAAAACATAAAGAGGGGTGCAAC
391 AAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAAC
* * *
1918 ACCAGGACATCCTAGGAGGTCACCCATCCTAGTACTACTCACGCCCAAGCACGCTTAACTGCGGA
456 ACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGA
* * * * *
1983 GTTTTGAAT-GGATCCGATGCATTAGTGTTGGTATGATCACACCCATTATGTTTTGCGCAATCAA
521 GTTCTG-ATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATCTA
* * *
2047 TTTACATAAAGGGTACCTTTCATCTCATTCATGCCTCGAATTTGAATGTAACTATACCCAAATAA
585 TTTACATAAAGGCTACCTTTCATCCCATTCATGCCTCGAATTTGAATGTAAATATACCCAAATAA
* * * *
2112 TGCTCAGAAAGACATATTATCGCGGATAAAAATAAAATAAAAACACG
650 TGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACG
* * * * *
2159 ATAATAATGTCTATGTATCCTATGAAGCTTTACTATTTCGTAAAATTACAAACTTACGATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
* *
2224 AAATAATAC-AAAAGAAAAAATAAACAAAAAGAAGGGTGCAACACGAGGACTT-CTAGGAGGTCA
66 AAATAATACAAAAAGAAAAAA-AAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCA
* * * * * * * *
2287 CCCATCCCAATACAACTCTCACCCAAGCACACTTAGCTACGAAGTTCTGATGGGATCCGGTGCAT
130 CCCATCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCAGTGCAT
* * * *
2352 TATTACTGGTCTGATCGCACCCATTATGTTTTACGCAATCTATTTACATAAAGGCTACCTTTCAT
195 TAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCAT
* * * *
2417 CCTATTCGTGCCTAGAATTTTGAATGTAAGTATACCCAAATAATGCTCGAGAAGATGTATTTTCG
260 CCCATTCGTGCCTCGAA-TTTGAATGTAAGTATACCCAAATAATGCTCGGGAAGACGTATTTTCG
* * * *
2482 CGAATAAAAATAAAACAAAAACACGCTAATAATGTCAATGTATCCCATGATGCTTTACTATTTCG
324 CGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCG
*
2547 CAAAATTGCAAACTTACGATAAATAAAATAATACAAGAAGAAAAAAAAAAACCAAAAAGAGGGGT
389 CAAAATTGCAAACTTACGATAAATAAAATAATACAA-AA-AGAAAAAAAAA-CAAAAAGAGGGGT
* * * *
2612 GCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCATGCACACTTAACG
451 GCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
* * * **
2677 GCGGAGTTCTGATGGGATCCGATGCATCAGTGTTGGTATGATTGCACCCATTATGTTCTAAGCAA
516 GCGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAA
* * * *
2742 TCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGTCTCGAATTTGAATATAAATGTACCCAA
581 TCTATTTACATAAAGGCTACCTTTCATCCCATTCATGCCTCGAATTTGAATGTAAATATACCCAA
* *
2807 ATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAGAAACATG
646 ATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACG
* * *
2858 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGTAAAATTGCAAACTTAAGAGAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
* * * *
2923 AAATAATGCAAAAAGAAAAAAAAATAAAAATAGGGGTGCAACACGAGGACTTCCCAAGAGGTCAC
66 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC
* * * * * * * *
2988 CCATCCTA-AAGCTACTCTCACCCAAGCACGCTTAACTACAGTGTTCTGATGGGATTCAATGCAT
131 CCATCCTAGTA-CTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCAGTGCAT
* *
3052 TAGTGCTGGTATGATCGCACCGATTATATTTTGCGCAATCTATTTACATAAAGGCTACCTTTCAT
195 TAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCAT
* * * *
3117 CCCATTTGTGCCTTGAATTTGAATGTAAGTATAACCAAATAATGATCGGGAAGACGTATTTTCGC
260 CCCATTCGTGCCTCGAATTTGAATGTAAGTATACCCAAATAATGCTCGGGAAGACGTATTTTCGC
* * * * * *
3182 GAATAAAAATAAAATAGAAACACGTTAATAATGTCCATGTATCCCATAAAGCATTACTATTTCAC
325 GGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGC
* * *
3247 AAAATTGCAAACTTACTATAAATAAAATAATACAAAAAG-AAAATAAAGAAAAAGAGGGGTGCAA
390 AAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAA
* * * *
3311 CACGTGGACTTCCTAGCAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACTCTTAATTGCGG
455 CACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGG
*
3376 AGTTCTGATGGGATCC-AGTGCATTAGTGCTGGTATGATCGCTCCCATTATGTTCTGCGCAATCT
520 AGTTCTGATGGGATCCGA-TGCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATCT
* *
3440 ATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCTAAATA
584 ATTTACATAAAGGCTACCTTTCATCCCATTCATGCCTCGAATTTGAATGTAAATATACCCAAATA
*
3505 ATGCTCGGGAAGACGTATTTTCGCGGATAAAAAGAAAATAAAAACACG
649 ATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACG
* * *
3553 CTAATAATGTCTATATA-CCCTATGAAGCTTTACTATTTCGCAAAATTACAAACTTACGATAAAT
1 CTAATAATGTCCATGTATCCC-ATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAAT
*
3617 AAAATAATAC-AAAAGAAAAAAAAAACAAAAAAAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
65 AAAATAATACAAAAAG-AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
* * * * * *
3681 AACCAACCTAGTACTACTCACGCCTAAGCACGCTTAACTGCGGAGTTTTGAAT-GGATCC-GTTG
129 ACCCATCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTG-ATGGGATCCAG-TG
*
3744 CATTAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTTTTTACATAAAGGCTACCTTT
192 CATTAGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTT
* *
3809 CATCCCATTCGTGCCTCGAATTTGAATGGAAGTATACCCAAATAATGCTCGGGAACACGTATTTT
257 CATCCCATTCGTGCCTCGAATTTGAATGTAAGTATACCCAAATAATGCTCGGGAAGACGTATTTT
* * * * *
3874 GGTGGATAAAAATAAAATAAAAAAGACGCTAATAATTTCCATGTATCCCAT-AAGCGTTACTATT
322 CGCGGATAAAAATAAAAT-AAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATT
* *
3938 TCGCAAAATTGCAAACTTATGATAAATAAAATAGTAC-AAAAGAAAAAAAAACAAAAAGAGGGGT
386 TCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGT
* *
4002 GCAACACGAGGACTTTCC-AGGAGGTCACCCATCCTGGTACTACTCCCGCCCAAGCACGCTTAAC
451 GCAACACGAGGAC-TTCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * * *
4066 TACGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCAATTATGTTTTACGCA
515 TGCGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCA
* *
4131 ATCTATTTACATAAAGGCTACCTTTCATCCCATTCATGCCTCGAATTTGAATGTAAGTATACCCG
580 ATCTATTTACATAAAGGCTACCTTTCATCCCATTCATGCCTCGAATTTGAATGTAAATATACCCA
* * *
4196 AATAATGCTCGAGAAGACGTATTTTCGTGGATAAAAATAAAATAAAAACACA
645 AATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACG
* * *
4248 CTAATAATGTCAATGTATCCCATGAAGCTTTATTATTTCGCAAAATTGCAAACTTATGATAAATA
1 CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
*
4313 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCAAGGAGGTCAC
66 AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC
* *
4378 CCATCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGTTGGGATCCAGTCCATT
131 CCATCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCAGTGCATT
* * * * * * *
4443 ACTGTTGGAATGATCGCACCCATTATGTTATGTGCAATCTATTTACATAAACGCTAGCTTTCATC
196 AGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCATC
* * *
4508 CCATTCGTGCCTTGAATTTGAATGGAAGTATACCCAAATAATGCTCGGGAAGACGTATTTTCGTG
261 CCATTCGTGCCTCGAATTTGAATGTAAGTATACCCAAATAATGCTCGGGAAGACGTATTTTCGCG
4573 GATAAAAATAAAATAAAAACACGCTAATAATG
326 GATAAAAATAAAATAAAAACACGCTAATAATG
Statistics
Matches: 3451, Mismatches: 354, Indels: 61
0.89 0.09 0.02
Matches are distributed among these distances:
692 4 0.00
693 458 0.13
694 203 0.06
695 1727 0.50
696 369 0.11
697 75 0.02
698 12 0.00
699 458 0.13
700 145 0.04
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (696 bp):
CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATA
AAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC
CCATCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCAGTGCATT
AGTGCTGGTATGATCGCACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTCATC
CCATTCGTGCCTCGAATTTGAATGTAAGTATACCCAAATAATGCTCGGGAAGACGTATTTTCGCG
GATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCA
AAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAAC
ACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGA
GTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATCTAT
TTACATAAAGGCTACCTTTCATCCCATTCATGCCTCGAATTTGAATGTAAATATACCCAAATAAT
GCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACG
Done.