Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002972.1 Kokia drynarioides strain JFW-HI SEQ_115451, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6957
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.35


Found at i:1983 original size:25 final size:24

Alignment explanation


    Indices: 1955--2003  Score: 89
    Period size: 25  Copynumber: 2.0  Consensus size: 24

       1945 CCAATTTGTC

                                     
       1955 TTTTGGAGCATCTAAATGCAATGTT
          1 TTTTGGAGCATCTAAATGC-ATGTT

                                    
       1980 TTTTGGAGCATCTAAATGCATGTT
          1 TTTTGGAGCATCTAAATGCATGTT

       2004 AAATACAGAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  24    5  0.21
  25   19  0.79

ACGTcount: A:0.27, C:0.12, G:0.20, T:0.41


Consensus pattern (24 bp):   
TTTTGGAGCATCTAAATGCATGTT

Found at i:6137 original size:31 final size:31

Alignment explanation


    Indices: 6099--6160  Score: 106
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       6089 ATAATCTAGG

                                           
       6099 GATTTAAATAAAAACTTTCAAAAAATTTAAT
          1 GATTTAAATAAAAACTTTCAAAAAATTTAAT

                          *       *        
       6130 GATTTAAATAAAAATTTTCAAATAATTTAAT
          1 GATTTAAATAAAAACTTTCAAAAAATTTAAT

       6161 TATCATTTTA


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  31   29  1.00

ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39


Consensus pattern (31 bp):   
GATTTAAATAAAAACTTTCAAAAAATTTAAT
Done.