Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002984.1 Kokia drynarioides strain JFW-HI SEQ_115471, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2728
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32


Found at i:709 original size:23 final size:22

Alignment explanation


    Indices: 663--720  Score: 80
    Period size: 23  Copynumber: 2.6  Consensus size: 22

        653 ATTTACGCTA

                               *  
        663 TGTGTGCCTACTGATTGCATTG
          1 TGTGTGCCTACTGATTGCACTG

                      *            
        685 TGTGTGCCTATTGGATTGCACTG
          1 TGTGTGCCTACT-GATTGCACTG

                   *     
        708 TGTGTGCTTACTG
          1 TGTGTGCCTACTG

        721 TTAAGTACTT


Statistics
Matches: 31,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  22   12  0.39
  23   19  0.61

ACGTcount: A:0.12, C:0.17, G:0.29, T:0.41


Consensus pattern (22 bp):   
TGTGTGCCTACTGATTGCACTG
Done.