genome.fa.s2991.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002991.1 Kokia drynarioides strain JFW-HI SEQ_115480, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77957

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12218--12257	21	1.9	21	84	0	53	15	12	15	57	1.66
20615--20685	24	3.0	24	82	0	88	25	12	9	52	1.70
27675--27708	17	2.0	17	94	0	59	35	14	23	26	1.94
27726--27770	24	1.9	24	90	4	74	37	22	22	17	1.94
27790--27894	34	3.0	34	83	13	133	54	7	0	38	1.29
30941--31038	43	2.3	43	85	1	135	28	16	27	27	1.97
30960--31042	43	1.9	43	95	0	148	26	18	28	26	1.98
31021--31061	20	2.1	20	90	4	66	21	14	41	21	1.89
31601--31640	16	2.5	16	95	0	71	42	30	0	27	1.56
32232--32317	35	2.5	35	96	0	154	45	16	10	27	1.80
32707--32738	15	2.1	15	94	0	55	9	0	34	56	1.32
35698--35781	9	9.6	9	69	25	56	66	1	1	30	1.07
35699--35755	15	4.0	14	72	18	55	64	1	0	33	1.04
35698--35781	18	4.8	17	78	15	84	66	1	1	30	1.07
36004--36078	30	2.5	29	81	8	87	28	4	1	66	1.17
36353--36525	93	1.9	94	79	8	201	43	6	12	36	1.68
37041--37086	17	2.8	16	76	23	51	67	0	2	30	1.03
37054--37087	18	1.9	17	88	5	50	67	0	0	32	0.91
39422--39473	27	1.9	27	84	0	68	21	1	15	61	1.43
39547--39635	40	2.2	40	79	0	106	23	22	12	41	1.87
41362--41392	16	1.9	16	93	0	53	29	32	22	16	1.95
42633--42657	13	1.9	13	100	0	50	52	0	24	24	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47052--47097	24	2.0	23	91	4	74	30	4	0	65	1.12
47057--47107	22	2.2	24	86	6	70	31	5	1	60	1.31
54363--54426	23	2.7	23	82	2	83	43	17	9	29	1.80
56257--56301	22	2.0	22	87	8	65	62	0	0	37	0.96
57316--57359	19	2.3	19	88	0	61	38	11	18	31	1.86
63099--63235	40	3.5	40	79	6	163	30	13	13	42	1.83
65552--65579	9	3.1	9	100	0	56	0	0	46	53	1.00
65649--65739	41	2.2	40	78	7	103	40	9	13	36	1.77
65649--65739	20	4.5	20	68	20	64	40	9	13	36	1.77
72355--72453	40	2.5	40	83	8	130	31	13	13	42	1.82
76561--76681	50	2.5	48	76	10	113	43	1	2	52	1.24

Tables:   1

The End!