Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01002992.1 Kokia drynarioides strain JFW-HI SEQ_115483, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82141
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Found at i:8649 original size:15 final size:15
Alignment explanation
Indices: 8629--8678 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 15
8619 TCATAATATG
8629 ATTTTATTATGCTTA
1 ATTTTATTATGCTTA
*
8644 ATTTTAATTATACTATA
1 ATTTT-ATTATGCT-TA
8661 ATTATT-TTATGCTTA
1 ATT-TTATTATGCTTA
8676 ATT
1 ATT
8679 GAACAATGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
15 10 0.33
16 13 0.43
17 5 0.17
18 2 0.07
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (15 bp):
ATTTTATTATGCTTA
Found at i:18463 original size:21 final size:21
Alignment explanation
Indices: 18419--18470 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
18409 CTTGACAGTT
* *
18419 CTACCTATACAAGTGAGACAA
1 CTACCGATACAAGTCAGACAA
* *
18440 CTACCGATACAAGTCATACTA
1 CTACCGATACAAGTCAGACAA
*
18461 CTACAGATAC
1 CTACCGATAC
18471 TAAAAACTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.40, C:0.27, G:0.12, T:0.21
Consensus pattern (21 bp):
CTACCGATACAAGTCAGACAA
Found at i:19198 original size:36 final size:36
Alignment explanation
Indices: 19134--19227 Score: 134
Period size: 36 Copynumber: 2.6 Consensus size: 36
19124 TCATTATTTG
*
19134 TTTTACTCCCTATTAACCCCAAAGGTCATGATGCTCA
1 TTTTACTCCCTATTGA-CCCAAAGGTCATGATGCTCA
*
19171 TTTTACTCCCTATTGACCCAAAGGTCATTATGCTCA
1 TTTTACTCCCTATTGACCCAAAGGTCATGATGCTCA
* * *
19207 TTTTTCTCCTTGTTGACCCAA
1 TTTTACTCCCTATTGACCCAA
19228 TGTTCATGCC
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
36 37 0.71
37 15 0.29
ACGTcount: A:0.23, C:0.29, G:0.11, T:0.37
Consensus pattern (36 bp):
TTTTACTCCCTATTGACCCAAAGGTCATGATGCTCA
Found at i:20114 original size:18 final size:20
Alignment explanation
Indices: 20091--20129 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
20081 ATACGAACTC
20091 AAAAACA-T-AGAAATCACT
1 AAAAACAGTGAGAAATCACT
20109 AAAAACAGGTGAGAAATCACT
1 AAAAACA-GTGAGAAATCACT
20130 CACCTAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
20 1 0.06
21 10 0.56
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.15
Consensus pattern (20 bp):
AAAAACAGTGAGAAATCACT
Found at i:27272 original size:20 final size:21
Alignment explanation
Indices: 27224--27272 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
27214 TTTATTAATA
27224 TTTTAT-AATTTTGTATGCAT
1 TTTTATAAATTTTGTATGCAT
*
27244 TTTTATAAATTTT-TATGTAT
1 TTTTATAAATTTTGTATGCAT
27264 TTTTATAAA
1 TTTTATAAA
27273 AAAAGAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (21 bp):
TTTTATAAATTTTGTATGCAT
Found at i:52703 original size:37 final size:37
Alignment explanation
Indices: 52645--52771 Score: 173
Period size: 37 Copynumber: 3.4 Consensus size: 37
52635 GTTCTTGGAT
* * *
52645 CACCGGCACAAAGCCTGCTAGGCACATAGCCCGAATA
1 CACCGGCACAAAGCCTACTAGGCACATAGCCTGAAAA
* *
52682 CACCAGCACAAAGCCTACTAGGCACATAGCTTGAAAA
1 CACCGGCACAAAGCCTACTAGGCACATAGCCTGAAAA
* * * *
52719 CATCGGCACGAAGCCTACTAGGCACAAAGCCTAAAAA
1 CACCGGCACAAAGCCTACTAGGCACATAGCCTGAAAA
52756 CACCGGCACAAAGCCT
1 CACCGGCACAAAGCCT
52772 GAAAACATCG
Statistics
Matches: 77, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 77 1.00
ACGTcount: A:0.37, C:0.33, G:0.19, T:0.11
Consensus pattern (37 bp):
CACCGGCACAAAGCCTACTAGGCACATAGCCTGAAAA
Found at i:52775 original size:58 final size:58
Alignment explanation
Indices: 52702--52887 Score: 309
Period size: 58 Copynumber: 3.2 Consensus size: 58
52692 AAGCCTACTA
* * *
52702 GGCACATAGCTTGAAAACATCGGCACGAAGCCTACTAGGCACAAAGCCTAAAAACACC
1 GGCACAAAGCCTGAAAACATCGACACGAAGCCTACTAGGCACAAAGCCTAAAAACACC
52760 GGCACAAAGCCTGAAAACATCGACACGAAGCCTACTAGGCACAAAGCCTAAAAACACC
1 GGCACAAAGCCTGAAAACATCGACACGAAGCCTACTAGGCACAAAGCCTAAAAACACC
* * *
52818 GGCATAAAGCCTGAAAACATCGACACGAAGCCTACTAGGCATAAAGCCTGAAAACACC
1 GGCACAAAGCCTGAAAACATCGACACGAAGCCTACTAGGCACAAAGCCTAAAAACACC
*
52876 GACACAAAGCCT
1 GGCACAAAGCCT
52888 ACTAGGCACA
Statistics
Matches: 120, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 120 1.00
ACGTcount: A:0.41, C:0.30, G:0.18, T:0.11
Consensus pattern (58 bp):
GGCACAAAGCCTGAAAACATCGACACGAAGCCTACTAGGCACAAAGCCTAAAAACACC
Found at i:52814 original size:95 final size:92
Alignment explanation
Indices: 52651--52905 Score: 248
Period size: 95 Copynumber: 2.7 Consensus size: 92
52641 GGATCACCGG
* * * * * * *
52651 CACAAAGCCTGCTAGGCACATAGCCCGAATACACC-AGCACAAAGCCTACTAGGCACATAGCTTG
1 CACAAAGCCTACTAGGCACAAAGCCTGAAAACACCGA-CACAAAGCCTACTAGGCACAAAGCCTA
* * *
52715 AAAACATCGGCACGAAGCCT-AC-TAGG
65 AAAACACCGGCACAAAGCCTAACATAGA
* *
52741 CACAAAGCCTAAAAAC-ACCGGCACAAAGCCTGAAAACATCGACACGAAGCCTACTAGGCACAAA
1 CACAAAGCCT----ACTA--GGCACAAAGCCTGAAAACACCGACACAAAGCCTACTAGGCACAAA
* *
52805 GCCTAAAAACACCGGCATAAAGCCTGAAAACATCGA
60 GCCTAAAAACACCGGCACAAAGCCT---AACATAGA
* *
52841 CACGAAGCCTACTAGGCATAAAGCCTGAAAACACCGACACAAAGCCTACTAGGCACAAAGCCTAA
1 CACAAAGCCTACTAGGCACAAAGCCTGAAAACACCGACACAAAGCCTACTAGGCACAAAGCCTAA
52906 TTGTTTAAAT
Statistics
Matches: 134, Mismatches: 18, Indels: 21
0.77 0.10 0.12
Matches are distributed among these distances:
90 10 0.07
93 1 0.01
94 1 0.01
95 105 0.78
96 3 0.02
97 1 0.01
99 2 0.01
100 11 0.08
ACGTcount: A:0.41, C:0.31, G:0.18, T:0.11
Consensus pattern (92 bp):
CACAAAGCCTACTAGGCACAAAGCCTGAAAACACCGACACAAAGCCTACTAGGCACAAAGCCTAA
AAACACCGGCACAAAGCCTAACATAGA
Found at i:52859 original size:37 final size:37
Alignment explanation
Indices: 52818--52903 Score: 145
Period size: 37 Copynumber: 2.3 Consensus size: 37
52808 TAAAAACACC
* *
52818 GGCATAAAGCCTGAAAACATCGACACGAAGCCTACTA
1 GGCATAAAGCCTGAAAACACCGACACAAAGCCTACTA
52855 GGCATAAAGCCTGAAAACACCGACACAAAGCCTACTA
1 GGCATAAAGCCTGAAAACACCGACACAAAGCCTACTA
*
52892 GGCACAAAGCCT
1 GGCATAAAGCCT
52904 AATTGTTTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.41, C:0.29, G:0.19, T:0.12
Consensus pattern (37 bp):
GGCATAAAGCCTGAAAACACCGACACAAAGCCTACTA
Found at i:52886 original size:21 final size:21
Alignment explanation
Indices: 52739--52887 Score: 97
Period size: 21 Copynumber: 7.6 Consensus size: 21
52729 AAGCCTACTA
*
52739 GGCACAAAGCCTAAAAACACC
1 GGCACAAAGCCTGAAAACACC
*
52760 GGCACAAAGCCTGAAAACATC
1 GGCACAAAGCCTGAAAACACC
* *
52781 GACACGAAGCCT----ACTA--
1 GGCACAAAGCCTGAAAAC-ACC
*
52797 GGCACAAAGCCTAAAAACACC
1 GGCACAAAGCCTGAAAACACC
* *
52818 GGCATAAAGCCTGAAAACATC
1 GGCACAAAGCCTGAAAACACC
* *
52839 GACACGAAGCCT----ACTA--
1 GGCACAAAGCCTGAAAAC-ACC
*
52855 GGCATAAAGCCTGAAAACACC
1 GGCACAAAGCCTGAAAACACC
*
52876 GACACAAAGCCT
1 GGCACAAAGCCT
52888 ACTAGGCACA
Statistics
Matches: 97, Mismatches: 17, Indels: 28
0.68 0.12 0.20
Matches are distributed among these distances:
16 19 0.20
17 4 0.04
18 2 0.02
19 2 0.02
20 4 0.04
21 66 0.68
ACGTcount: A:0.43, C:0.30, G:0.17, T:0.09
Consensus pattern (21 bp):
GGCACAAAGCCTGAAAACACC
Found at i:54548 original size:29 final size:29
Alignment explanation
Indices: 54515--54598 Score: 105
Period size: 29 Copynumber: 2.8 Consensus size: 29
54505 CCATGCATAT
* * *
54515 ACATATATACTATATATAATAAAGCCTAT
1 ACATATATATTATATATAATAAAGCCCAC
* *
54544 GCATATATATTATATAAAATAAAGCCCAC
1 ACATATATATTATATATAATAAAGCCCAC
54573 ACATATATATTATCTATATAATAAAG
1 ACATATATATTA--TATATAATAAAG
54599 TCACGCCTAC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
29 35 0.76
31 11 0.24
ACGTcount: A:0.49, C:0.13, G:0.05, T:0.33
Consensus pattern (29 bp):
ACATATATATTATATATAATAAAGCCCAC
Found at i:56010 original size:20 final size:21
Alignment explanation
Indices: 55975--56013 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
55965 CATAATTTTC
*
55975 AGCATATTTTATTCATATACA
1 AGCATATTTTAATCATATACA
55996 AGCATA-TTTAATCATATA
1 AGCATATTTTAATCATATA
56014 TTCATGTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (21 bp):
AGCATATTTTAATCATATACA
Found at i:56939 original size:19 final size:20
Alignment explanation
Indices: 56897--56939 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
56887 TAGTAAACTT
*
56897 TAAACTCTAATATCTTTGTC
1 TAAACTCTAATATCTTTGTA
56917 TAAACT-TAATAT-TTTCGTA
1 TAAACTCTAATATCTTT-GTA
56936 TAAA
1 TAAA
56940 ACGAATTACG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 3 0.14
19 12 0.57
20 6 0.29
ACGTcount: A:0.37, C:0.14, G:0.05, T:0.44
Consensus pattern (20 bp):
TAAACTCTAATATCTTTGTA
Found at i:60172 original size:13 final size:14
Alignment explanation
Indices: 60154--60186 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
60144 CTTCTTATTC
60154 TCCTTCTTGT-TTT
1 TCCTTCTTGTCTTT
*
60167 TCCTTCTTTTCTTT
1 TCCTTCTTGTCTTT
60181 TCCTTC
1 TCCTTC
60187 CTTTTTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.00, C:0.30, G:0.03, T:0.67
Consensus pattern (14 bp):
TCCTTCTTGTCTTT
Found at i:60183 original size:14 final size:13
Alignment explanation
Indices: 60154--60193 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
60144 CTTCTTATTC
*
60154 TCCTTCTTGTTTT
1 TCCTTCTTTTTTT
60167 TCCTTCTTTTCTTT
1 TCCTTCTTTT-TTT
60181 TCCTTCCTTTTTT
1 TCCTT-CTTTTTT
60194 CTTTTCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 9 0.38
14 10 0.42
15 5 0.21
ACGTcount: A:0.00, C:0.28, G:0.03, T:0.70
Consensus pattern (13 bp):
TCCTTCTTTTTTT
Found at i:60187 original size:18 final size:17
Alignment explanation
Indices: 60166--60199 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
60156 CTTCTTGTTT
60166 TTCCTTCTTTTCTTTTCC
1 TTCCTT-TTTTCTTTTCC
60184 TTCCTTTTTTCTTTTC
1 TTCCTTTTTTCTTTTC
60200 TTTTCTTCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (17 bp):
TTCCTTTTTTCTTTTCC
Found at i:60193 original size:27 final size:27
Alignment explanation
Indices: 60154--60206 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
60144 CTTCTTATTC
60154 TCCTTCTTGTTTTTC-CTTCTTTTCTTT
1 TCCTTC-TGTTTTTCTCTTCTTTTCTTT
*
60181 TCCTTCCT-TTTTTCTTTTCTTTTCTT
1 TCCTT-CTGTTTTTCTCTTCTTTTCTT
60207 CTGCTTCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 6 0.26
27 16 0.70
28 1 0.04
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (27 bp):
TCCTTCTGTTTTTCTCTTCTTTTCTTT
Found at i:60550 original size:17 final size:17
Alignment explanation
Indices: 60512--60572 Score: 56
Period size: 18 Copynumber: 3.6 Consensus size: 17
60502 TCGGGACAAC
*
60512 TTTTTCTTCTTATTCTCC-
1 TTTTTCTT-TT-TCCTCCT
*
60530 TTTTTCTTTTTCCT-TT
1 TTTTTCTTTTTCCTCCT
60546 TTTTTC-TTTTCCTTCCT
1 TTTTTCTTTTTCC-TCCT
60563 TTTTTCTTTT
1 TTTTTCTTTT
60573 CTCTTCTTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
15 6 0.17
16 10 0.28
17 9 0.25
18 11 0.31
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTTCTTTTTCCTCCT
Found at i:60551 original size:16 final size:17
Alignment explanation
Indices: 60530--60572 Score: 63
Period size: 15 Copynumber: 2.6 Consensus size: 17
60520 CTTATTCTCC
60530 TTTTTCTTTTTCCTT-T
1 TTTTTCTTTTTCCTTCT
60546 TTTTTC-TTTTCCTTCCT
1 TTTTTCTTTTTCCTT-CT
60563 TTTTTCTTTT
1 TTTTTCTTTT
60573 CTCTTCTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 8 0.33
16 6 0.25
17 7 0.29
18 3 0.12
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTCTTTTTCCTTCT
Found at i:60573 original size:17 final size:16
Alignment explanation
Indices: 60530--60580 Score: 68
Period size: 17 Copynumber: 3.1 Consensus size: 16
60520 CTTATTCTCC
60530 TTTTTCTTTTTCCTT-T
1 TTTTTC-TTTTCCTTCT
60546 TTTTTCTTTTCCTTCCT
1 TTTTTCTTTTCCTT-CT
60563 TTTTTCTTTTCTCTTCT
1 TTTTTCTTTTC-CTTCT
60580 T
1 T
60581 CTACTTCAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
15 8 0.25
16 6 0.19
17 15 0.47
18 3 0.09
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTCTTTTCCTTCT
Found at i:60769 original size:374 final size:373
Alignment explanation
Indices: 60067--60796 Score: 1226
Period size: 374 Copynumber: 2.0 Consensus size: 373
60057 TAGATGGTGA
* * *
60067 CAATTGTTCAACAGATGCACCCACATTGGCAGGTGCATCGATAAATTTCTCCGATAAATTTGTCG
1 CAATTCTTCAACAGATGCACCCACACTGGCAAGTGCATCGATAAATTTCTCCGATAAATTTGTCG
*
60132 GGACAACTTTTTCTTCTTATTCTCCTTCTTGTTTTTCCTTCTTTTCTTTTCCTTCCTTTTTTCTT
66 GGACAACTTTTTCTTCTTATTCTCCTTCTTCTTTTTCCTTCTTTTCTTTTCCTTCCTTTTTTCTT
* * * * * *
60197 TTCTTTTCTTCTGCTTCAATACCCACAGAAGCAATTGGTGTGTGCTCTTCCATAGCAGTAGCCTC
131 TTCTCTTCTTCTACTTCAACACCCACAAAAGCAATTGGTCTGTGCTCTTCCATAGCAGCAGCCTC
* * * *
60262 TTTTTCTGCCATATTGGCGCTTAAACTATTTGAAAATTCTTCCTCAAAGAGGCTGGCTATGTTTC
196 TTTTTCCGCCATATTGGCCCTCAAACTATTTGAAAATTCTTCCTCAAAAAGGCTGGCTATGTTTC
* *
60327 AGAAACAATCCTCCATATCCTTGGAGTGCACCTCTTAATCCTCATCGTCAAAGATGTGGATTCTA
261 AGAAACAATCCTCCATATCCTTGGACTGCACCTCTTAATCCTCATCGTCAAAGATGTGGATACTA
*
60392 TGCGGGGACTGGACGGACTGAGTTCTTCCTTCTAAAGAATGCTGGTAC
326 TGCGGGGACTGGACAGACTGAGTTCTTCCTTCTAAAGAATGCTGGTAC
* *
60440 CAATTCTTCAATAGATGCACCCATACTGGCAAGTGCATCGATAAATTTCTCCGATAAATTTGTCG
1 CAATTCTTCAACAGATGCACCCACACTGGCAAGTGCATCGATAAATTTCTCCGATAAATTTGTCG
* *
60505 GGACAACTTTTTCTTCTTATTCTCCTTTTTCTTTTTCCTTTTTTTTCTTTTCCTTCCTTTTTTCT
66 GGACAACTTTTTCTTCTTATTCTCCTTCTTCTTTTTCC-TTCTTTTCTTTTCCTTCCTTTTTTCT
60570 TTTCTCTTCTTCTACTTCAACACCCACAAAAGCAATTGGTCTGTGCTCTTCCATAGCAGCAGCCT
130 TTTCTCTTCTTCTACTTCAACACCCACAAAAGCAATTGGTCTGTGCTCTTCCATAGCAGCAGCCT
*
60635 TTTTTTCCGCCATATTGGCCCTCAAACTATTTGAAAATTCTTCCTCAAAAAGGCTGGCTATGTTT
195 CTTTTTCCGCCATATTGGCCCTCAAACTATTTGAAAATTCTTCCTCAAAAAGGCTGGCTATGTTT
* *
60700 CAGAAACAATCCTCCATATCCTTGGACTGCACCTCTTAATCCTCATTGTCAGAGATGTGGATACT
260 CAGAAACAATCCTCCATATCCTTGGACTGCACCTCTTAATCCTCATCGTCAAAGATGTGGATACT
*
60765 ATGCGGGGACTGGACAGACTGTGTTCTTCCTT
325 ATGCGGGGACTGGACAGACTGAGTTCTTCCTT
60797 TTGAAGCATG
Statistics
Matches: 331, Mismatches: 25, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
373 96 0.29
374 235 0.71
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (373 bp):
CAATTCTTCAACAGATGCACCCACACTGGCAAGTGCATCGATAAATTTCTCCGATAAATTTGTCG
GGACAACTTTTTCTTCTTATTCTCCTTCTTCTTTTTCCTTCTTTTCTTTTCCTTCCTTTTTTCTT
TTCTCTTCTTCTACTTCAACACCCACAAAAGCAATTGGTCTGTGCTCTTCCATAGCAGCAGCCTC
TTTTTCCGCCATATTGGCCCTCAAACTATTTGAAAATTCTTCCTCAAAAAGGCTGGCTATGTTTC
AGAAACAATCCTCCATATCCTTGGACTGCACCTCTTAATCCTCATCGTCAAAGATGTGGATACTA
TGCGGGGACTGGACAGACTGAGTTCTTCCTTCTAAAGAATGCTGGTAC
Found at i:66918 original size:24 final size:24
Alignment explanation
Indices: 66891--66942 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
66881 AGTTATATGA
*
66891 GTTACCATATGAATTCCTGTGGAT
1 GTTACCATATGAATTCCTGCGGAT
66915 GTTACCATATGAATTCCTGCGGAT
1 GTTACCATATGAATTCCTGCGGAT
66939 GTTA
1 GTTA
66943 TTGATATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (24 bp):
GTTACCATATGAATTCCTGCGGAT
Done.