Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002994.1 Kokia drynarioides strain JFW-HI SEQ_115485, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8903
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39


Found at i:4165 original size:2 final size:2

Alignment explanation


    Indices: 4158--4186  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       4148 AGAAGGAAAC

                                                       
       4158 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       4187 TTGGTTTACC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.