Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000030.1 Kokia drynarioides strain JFW-HI SEQ_38287, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2934
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32


Found at i:2050 original size:7 final size:7

Alignment explanation


    Indices: 2040--2066  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

       2030 ATTAGCATAT

                   
       2040 TTTTGTG
          1 TTTTGTG

                   
       2047 TTTTGTG
          1 TTTTGTG

                   
       2054 TTTTGTG
          1 TTTTGTG

                  
       2061 TTTTGT
          1 TTTTGT

       2067 CATTGCATAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.00, C:0.00, G:0.26, T:0.74


Consensus pattern (7 bp):   
TTTTGTG

Done.