Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000300.1 Kokia drynarioides strain JFW-HI SEQ_111057, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1685
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36


Found at i:1637 original size:20 final size:20

Alignment explanation


    Indices: 1596--1637  Score: 50
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       1586 TATTTAAATA

                        *    *  
       1596 TAAATATTTAATGATTATTT
          1 TAAATATTTAATAATTAGTT

                                 
       1616 TAAATATTTAA-AATATAGTT
          1 TAAATATTTAATAAT-TAGTT

              
       1636 TA
          1 TA

       1638 TATAATCTAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  19    2  0.11
  20   17  0.89

ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50


Consensus pattern (20 bp):   
TAAATATTTAATAATTAGTT
Done.