Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01003007.1 Kokia drynarioides strain JFW-HI SEQ_115508, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3196
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Found at i:1431 original size:135 final size:137
Alignment explanation
Indices: 1267--1539 Score: 532
Period size: 135 Copynumber: 2.0 Consensus size: 137
1257 AAAGAAAAAA
1267 AGAAGAAAGCAACATCGAGAAAAGGACAAAAGGTTTTGTCAGTGCAGAAAAAGCTGAAAGAAACC
1 AGAAGAAAGCAACATCGAGAAAAGGACAAAAGGTTTTGTCAGTGCAGAAAAAGCTGAAAGAAACC
1332 AAC-G-GAGAGAGAGAGAGAGAGAAACAACGAAAGGAAGAAAGAAAGAGAAGCCTCTCTCTCTTT
66 AACGGAGAGAGAGAGAGAGAGAGAAACAACGAAAGGAAGAAAGAAAGAGAAGCCTCTCTCTCTTT
1395 CTTTCAC
131 CTTTCAC
1402 AGAAGAAAGCAACATCGAGAAAAGGACAAAAGGTTTTGTCAGTGCAGAAAAAGCTGAAAGAAACC
1 AGAAGAAAGCAACATCGAGAAAAGGACAAAAGGTTTTGTCAGTGCAGAAAAAGCTGAAAGAAACC
1467 AACGGAGAGAGAGAGAGAGAGAGAAACAACGAAAGGAAGAAAGAAAGAGAAGCCTCTCTCTCTTT
66 AACGGAGAGAGAGAGAGAGAGAGAAACAACGAAAGGAAGAAAGAAAGAGAAGCCTCTCTCTCTTT
1532 CTTTCAC
131 CTTTCAC
1539 A
1 A
1540 CTCCTATAAT
Statistics
Matches: 136, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
135 68 0.50
136 1 0.01
137 67 0.49
ACGTcount: A:0.46, C:0.15, G:0.25, T:0.13
Consensus pattern (137 bp):
AGAAGAAAGCAACATCGAGAAAAGGACAAAAGGTTTTGTCAGTGCAGAAAAAGCTGAAAGAAACC
AACGGAGAGAGAGAGAGAGAGAGAAACAACGAAAGGAAGAAAGAAAGAGAAGCCTCTCTCTCTTT
CTTTCAC
Done.