Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003012.1 Kokia drynarioides strain JFW-HI SEQ_115522, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1018
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.38


Found at i:416 original size:22 final size:21

Alignment explanation


    Indices: 372--417  Score: 65
    Period size: 22  Copynumber: 2.1  Consensus size: 21

        362 TTATAAGGTT

                             **  
        372 AAACAATTTTTTTTTTTTGAA
          1 AAACAATTTTTTTTTTTAAAA

                                  
        393 AAACTAATTTTTTTTTTTAAAA
          1 AAAC-AATTTTTTTTTTTAAAA

               
        415 AAA
          1 AAA

        418 AAAAAAATTA


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  21    4  0.18
  22   18  0.82

ACGTcount: A:0.41, C:0.04, G:0.02, T:0.52


Consensus pattern (21 bp):   
AAACAATTTTTTTTTTTAAAA
Done.