Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003015.1 Kokia drynarioides strain JFW-HI SEQ_115530, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1033
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38


Found at i:85 original size:23 final size:25

Alignment explanation


    Indices: 51--96  Score: 62
    Period size: 23  Copynumber: 1.9  Consensus size: 25

         41 CCAATTAGGG

                                     
         51 AATTATTATTT-AG-ATTTAATTCA
          1 AATTATTATTTAAGAATTTAATTCA

                                    
         74 AATTATCT-TTTAAGAATTTAATT
          1 AATTAT-TATTTAAGAATTTAATT

         97 TGGATCAAAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
  23    9  0.45
  24    3  0.15
  25    8  0.40

ACGTcount: A:0.39, C:0.04, G:0.04, T:0.52


Consensus pattern (25 bp):   
AATTATTATTTAAGAATTTAATTCA
Done.